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Incorporating trnH-psbA to the core DNA barcodes improves significantly species discrimination within southern African Combretaceae
Abstract. Recent studies indicate that the discriminatory power of the core DNA barcodes (rbcLa + matK) for land plants may have been overestimated since their performance have been tested only on few closely related species. In this study we focused mainly on how the addition of complementary barco...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Pensoft Publishers
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3890675/ https://www.ncbi.nlm.nih.gov/pubmed/24453555 http://dx.doi.org/10.3897/zookeys.365.5728 |
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author | Gere, Jephris Yessoufou, Kowiyou Daru, Barnabas H. Mankga, Ledile T. Maurin, Olivier van der Bank, Michelle |
author_facet | Gere, Jephris Yessoufou, Kowiyou Daru, Barnabas H. Mankga, Ledile T. Maurin, Olivier van der Bank, Michelle |
author_sort | Gere, Jephris |
collection | PubMed |
description | Abstract. Recent studies indicate that the discriminatory power of the core DNA barcodes (rbcLa + matK) for land plants may have been overestimated since their performance have been tested only on few closely related species. In this study we focused mainly on how the addition of complementary barcodes (nrITS and trnH-psbA) to the core barcodes will affect the performance of the core barcodes in discriminating closely related species from family to section levels. In general, we found that the core barcodes performed poorly compared to the various combinations tested. Using multiple criteria, we finally advocated for the use of the core + trnH-psbA as potential DNA barcode for the family Combretaceae at least in southern Africa. Our results also indicate that the success of DNA barcoding in discriminating closely related species may be related to evolutionary and possibly the biogeographic histories of the taxonomic group tested. |
format | Online Article Text |
id | pubmed-3890675 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Pensoft Publishers |
record_format | MEDLINE/PubMed |
spelling | pubmed-38906752014-01-16 Incorporating trnH-psbA to the core DNA barcodes improves significantly species discrimination within southern African Combretaceae Gere, Jephris Yessoufou, Kowiyou Daru, Barnabas H. Mankga, Ledile T. Maurin, Olivier van der Bank, Michelle Zookeys Article Abstract. Recent studies indicate that the discriminatory power of the core DNA barcodes (rbcLa + matK) for land plants may have been overestimated since their performance have been tested only on few closely related species. In this study we focused mainly on how the addition of complementary barcodes (nrITS and trnH-psbA) to the core barcodes will affect the performance of the core barcodes in discriminating closely related species from family to section levels. In general, we found that the core barcodes performed poorly compared to the various combinations tested. Using multiple criteria, we finally advocated for the use of the core + trnH-psbA as potential DNA barcode for the family Combretaceae at least in southern Africa. Our results also indicate that the success of DNA barcoding in discriminating closely related species may be related to evolutionary and possibly the biogeographic histories of the taxonomic group tested. Pensoft Publishers 2013-12-30 /pmc/articles/PMC3890675/ /pubmed/24453555 http://dx.doi.org/10.3897/zookeys.365.5728 Text en Jephris Gere, Kowiyou Yessoufou, Barnabas H. Daru, Ledile T. Mankga, Olivier Maurin, Michelle van der Bank http://creativecommons.org/licenses/by/4.0 This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Article Gere, Jephris Yessoufou, Kowiyou Daru, Barnabas H. Mankga, Ledile T. Maurin, Olivier van der Bank, Michelle Incorporating trnH-psbA to the core DNA barcodes improves significantly species discrimination within southern African Combretaceae |
title | Incorporating trnH-psbA to the core DNA barcodes improves significantly species discrimination within southern African Combretaceae |
title_full | Incorporating trnH-psbA to the core DNA barcodes improves significantly species discrimination within southern African Combretaceae |
title_fullStr | Incorporating trnH-psbA to the core DNA barcodes improves significantly species discrimination within southern African Combretaceae |
title_full_unstemmed | Incorporating trnH-psbA to the core DNA barcodes improves significantly species discrimination within southern African Combretaceae |
title_short | Incorporating trnH-psbA to the core DNA barcodes improves significantly species discrimination within southern African Combretaceae |
title_sort | incorporating trnh-psba to the core dna barcodes improves significantly species discrimination within southern african combretaceae |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3890675/ https://www.ncbi.nlm.nih.gov/pubmed/24453555 http://dx.doi.org/10.3897/zookeys.365.5728 |
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