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Utility of GenBank and the Barcode of Life Data Systems (BOLD) for the identification of forensically important Diptera from Belgium and France

Abstract. Fly larvae living on dead corpses can be used to estimate post-mortem intervals. The identification of these flies is decisive in forensic casework and can be facilitated by using DNA barcodes provided that a representative and comprehensive reference library of DNA barcodes is available....

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Autores principales: Sonet, Gontran, Jordaens, Kurt, Braet, Yves, Bourguignon, Luc, Dupont, Eréna, Backeljau, Thierry, De Meyer, Marc, Desmyter, Stijn
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Pensoft Publishers 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3890684/
https://www.ncbi.nlm.nih.gov/pubmed/24453564
http://dx.doi.org/10.3897/zookeys.365.6027
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author Sonet, Gontran
Jordaens, Kurt
Braet, Yves
Bourguignon, Luc
Dupont, Eréna
Backeljau, Thierry
De Meyer, Marc
Desmyter, Stijn
author_facet Sonet, Gontran
Jordaens, Kurt
Braet, Yves
Bourguignon, Luc
Dupont, Eréna
Backeljau, Thierry
De Meyer, Marc
Desmyter, Stijn
author_sort Sonet, Gontran
collection PubMed
description Abstract. Fly larvae living on dead corpses can be used to estimate post-mortem intervals. The identification of these flies is decisive in forensic casework and can be facilitated by using DNA barcodes provided that a representative and comprehensive reference library of DNA barcodes is available. We constructed a local (Belgium and France) reference library of 85 sequences of the COI DNA barcode fragment (mitochondrial cytochrome c oxidase subunit I gene), from 16 fly species of forensic interest (Calliphoridae, Muscidae, Fanniidae). This library was then used to evaluate the ability of two public libraries (GenBank and the Barcode of Life Data Systems – BOLD) to identify specimens from Belgian and French forensic cases. The public libraries indeed allow a correct identification of most specimens. Yet, some of the identifications remain ambiguous and some forensically important fly species are not, or insufficiently, represented in the reference libraries. Several search options offered by GenBank and BOLD can be used to further improve the identifications obtained from both libraries using DNA barcodes.
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spelling pubmed-38906842014-01-16 Utility of GenBank and the Barcode of Life Data Systems (BOLD) for the identification of forensically important Diptera from Belgium and France Sonet, Gontran Jordaens, Kurt Braet, Yves Bourguignon, Luc Dupont, Eréna Backeljau, Thierry De Meyer, Marc Desmyter, Stijn Zookeys Article Abstract. Fly larvae living on dead corpses can be used to estimate post-mortem intervals. The identification of these flies is decisive in forensic casework and can be facilitated by using DNA barcodes provided that a representative and comprehensive reference library of DNA barcodes is available. We constructed a local (Belgium and France) reference library of 85 sequences of the COI DNA barcode fragment (mitochondrial cytochrome c oxidase subunit I gene), from 16 fly species of forensic interest (Calliphoridae, Muscidae, Fanniidae). This library was then used to evaluate the ability of two public libraries (GenBank and the Barcode of Life Data Systems – BOLD) to identify specimens from Belgian and French forensic cases. The public libraries indeed allow a correct identification of most specimens. Yet, some of the identifications remain ambiguous and some forensically important fly species are not, or insufficiently, represented in the reference libraries. Several search options offered by GenBank and BOLD can be used to further improve the identifications obtained from both libraries using DNA barcodes. Pensoft Publishers 2013-12-30 /pmc/articles/PMC3890684/ /pubmed/24453564 http://dx.doi.org/10.3897/zookeys.365.6027 Text en Gontran Sonet, Kurt Jordaens, Yves Braet, Luc Bourguignon, Eréna Dupont, Thierry Backeljau, Marc De Meyer, Stijn Desmyter http://creativecommons.org/licenses/by/4.0 This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Article
Sonet, Gontran
Jordaens, Kurt
Braet, Yves
Bourguignon, Luc
Dupont, Eréna
Backeljau, Thierry
De Meyer, Marc
Desmyter, Stijn
Utility of GenBank and the Barcode of Life Data Systems (BOLD) for the identification of forensically important Diptera from Belgium and France
title Utility of GenBank and the Barcode of Life Data Systems (BOLD) for the identification of forensically important Diptera from Belgium and France
title_full Utility of GenBank and the Barcode of Life Data Systems (BOLD) for the identification of forensically important Diptera from Belgium and France
title_fullStr Utility of GenBank and the Barcode of Life Data Systems (BOLD) for the identification of forensically important Diptera from Belgium and France
title_full_unstemmed Utility of GenBank and the Barcode of Life Data Systems (BOLD) for the identification of forensically important Diptera from Belgium and France
title_short Utility of GenBank and the Barcode of Life Data Systems (BOLD) for the identification of forensically important Diptera from Belgium and France
title_sort utility of genbank and the barcode of life data systems (bold) for the identification of forensically important diptera from belgium and france
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3890684/
https://www.ncbi.nlm.nih.gov/pubmed/24453564
http://dx.doi.org/10.3897/zookeys.365.6027
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