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Using verbal autopsy to measure causes of death: the comparative performance of existing methods

BACKGROUND: Monitoring progress with disease and injury reduction in many populations will require widespread use of verbal autopsy (VA). Multiple methods have been developed for assigning cause of death from a VA but their application is restricted by uncertainty about their reliability. METHODS: W...

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Autores principales: Murray, Christopher JL, Lozano, Rafael, Flaxman, Abraham D, Serina, Peter, Phillips, David, Stewart, Andrea, James, Spencer L, Vahdatpour, Alireza, Atkinson, Charles, Freeman, Michael K, Ohno, Summer Lockett, Black, Robert, Ali, Said Mohammed, Baqui, Abdullah H, Dandona, Lalit, Dantzer, Emily, Darmstadt, Gary L, Das, Vinita, Dhingra, Usha, Dutta, Arup, Fawzi, Wafaie, Gómez, Sara, Hernández, Bernardo, Joshi, Rohina, Kalter, Henry D, Kumar, Aarti, Kumar, Vishwajeet, Lucero, Marilla, Mehta, Saurabh, Neal, Bruce, Praveen, Devarsetty, Premji, Zul, Ramírez-Villalobos, Dolores, Remolador, Hazel, Riley, Ian, Romero, Minerva, Said, Mwanaidi, Sanvictores, Diozele, Sazawal, Sunil, Tallo, Veronica, Lopez, Alan D
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3891983/
https://www.ncbi.nlm.nih.gov/pubmed/24405531
http://dx.doi.org/10.1186/1741-7015-12-5
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author Murray, Christopher JL
Lozano, Rafael
Flaxman, Abraham D
Serina, Peter
Phillips, David
Stewart, Andrea
James, Spencer L
Vahdatpour, Alireza
Atkinson, Charles
Freeman, Michael K
Ohno, Summer Lockett
Black, Robert
Ali, Said Mohammed
Baqui, Abdullah H
Dandona, Lalit
Dantzer, Emily
Darmstadt, Gary L
Das, Vinita
Dhingra, Usha
Dutta, Arup
Fawzi, Wafaie
Gómez, Sara
Hernández, Bernardo
Joshi, Rohina
Kalter, Henry D
Kumar, Aarti
Kumar, Vishwajeet
Lucero, Marilla
Mehta, Saurabh
Neal, Bruce
Praveen, Devarsetty
Premji, Zul
Ramírez-Villalobos, Dolores
Remolador, Hazel
Riley, Ian
Romero, Minerva
Said, Mwanaidi
Sanvictores, Diozele
Sazawal, Sunil
Tallo, Veronica
Lopez, Alan D
author_facet Murray, Christopher JL
Lozano, Rafael
Flaxman, Abraham D
Serina, Peter
Phillips, David
Stewart, Andrea
James, Spencer L
Vahdatpour, Alireza
Atkinson, Charles
Freeman, Michael K
Ohno, Summer Lockett
Black, Robert
Ali, Said Mohammed
Baqui, Abdullah H
Dandona, Lalit
Dantzer, Emily
Darmstadt, Gary L
Das, Vinita
Dhingra, Usha
Dutta, Arup
Fawzi, Wafaie
Gómez, Sara
Hernández, Bernardo
Joshi, Rohina
Kalter, Henry D
Kumar, Aarti
Kumar, Vishwajeet
Lucero, Marilla
Mehta, Saurabh
Neal, Bruce
Praveen, Devarsetty
Premji, Zul
Ramírez-Villalobos, Dolores
Remolador, Hazel
Riley, Ian
Romero, Minerva
Said, Mwanaidi
Sanvictores, Diozele
Sazawal, Sunil
Tallo, Veronica
Lopez, Alan D
author_sort Murray, Christopher JL
collection PubMed
description BACKGROUND: Monitoring progress with disease and injury reduction in many populations will require widespread use of verbal autopsy (VA). Multiple methods have been developed for assigning cause of death from a VA but their application is restricted by uncertainty about their reliability. METHODS: We investigated the validity of five automated VA methods for assigning cause of death: InterVA-4, Random Forest (RF), Simplified Symptom Pattern (SSP), Tariff method (Tariff), and King-Lu (KL), in addition to physician review of VA forms (PCVA), based on 12,535 cases from diverse populations for which the true cause of death had been reliably established. For adults, children, neonates and stillbirths, performance was assessed separately for individuals using sensitivity, specificity, Kappa, and chance-corrected concordance (CCC) and for populations using cause specific mortality fraction (CSMF) accuracy, with and without additional diagnostic information from prior contact with health services. A total of 500 train-test splits were used to ensure that results are robust to variation in the underlying cause of death distribution. RESULTS: Three automated diagnostic methods, Tariff, SSP, and RF, but not InterVA-4, performed better than physician review in all age groups, study sites, and for the majority of causes of death studied. For adults, CSMF accuracy ranged from 0.764 to 0.770, compared with 0.680 for PCVA and 0.625 for InterVA; CCC varied from 49.2% to 54.1%, compared with 42.2% for PCVA, and 23.8% for InterVA. For children, CSMF accuracy was 0.783 for Tariff, 0.678 for PCVA, and 0.520 for InterVA; CCC was 52.5% for Tariff, 44.5% for PCVA, and 30.3% for InterVA. For neonates, CSMF accuracy was 0.817 for Tariff, 0.719 for PCVA, and 0.629 for InterVA; CCC varied from 47.3% to 50.3% for the three automated methods, 29.3% for PCVA, and 19.4% for InterVA. The method with the highest sensitivity for a specific cause varied by cause. CONCLUSIONS: Physician review of verbal autopsy questionnaires is less accurate than automated methods in determining both individual and population causes of death. Overall, Tariff performs as well or better than other methods and should be widely applied in routine mortality surveillance systems with poor cause of death certification practices.
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spelling pubmed-38919832014-01-15 Using verbal autopsy to measure causes of death: the comparative performance of existing methods Murray, Christopher JL Lozano, Rafael Flaxman, Abraham D Serina, Peter Phillips, David Stewart, Andrea James, Spencer L Vahdatpour, Alireza Atkinson, Charles Freeman, Michael K Ohno, Summer Lockett Black, Robert Ali, Said Mohammed Baqui, Abdullah H Dandona, Lalit Dantzer, Emily Darmstadt, Gary L Das, Vinita Dhingra, Usha Dutta, Arup Fawzi, Wafaie Gómez, Sara Hernández, Bernardo Joshi, Rohina Kalter, Henry D Kumar, Aarti Kumar, Vishwajeet Lucero, Marilla Mehta, Saurabh Neal, Bruce Praveen, Devarsetty Premji, Zul Ramírez-Villalobos, Dolores Remolador, Hazel Riley, Ian Romero, Minerva Said, Mwanaidi Sanvictores, Diozele Sazawal, Sunil Tallo, Veronica Lopez, Alan D BMC Med Research Article BACKGROUND: Monitoring progress with disease and injury reduction in many populations will require widespread use of verbal autopsy (VA). Multiple methods have been developed for assigning cause of death from a VA but their application is restricted by uncertainty about their reliability. METHODS: We investigated the validity of five automated VA methods for assigning cause of death: InterVA-4, Random Forest (RF), Simplified Symptom Pattern (SSP), Tariff method (Tariff), and King-Lu (KL), in addition to physician review of VA forms (PCVA), based on 12,535 cases from diverse populations for which the true cause of death had been reliably established. For adults, children, neonates and stillbirths, performance was assessed separately for individuals using sensitivity, specificity, Kappa, and chance-corrected concordance (CCC) and for populations using cause specific mortality fraction (CSMF) accuracy, with and without additional diagnostic information from prior contact with health services. A total of 500 train-test splits were used to ensure that results are robust to variation in the underlying cause of death distribution. RESULTS: Three automated diagnostic methods, Tariff, SSP, and RF, but not InterVA-4, performed better than physician review in all age groups, study sites, and for the majority of causes of death studied. For adults, CSMF accuracy ranged from 0.764 to 0.770, compared with 0.680 for PCVA and 0.625 for InterVA; CCC varied from 49.2% to 54.1%, compared with 42.2% for PCVA, and 23.8% for InterVA. For children, CSMF accuracy was 0.783 for Tariff, 0.678 for PCVA, and 0.520 for InterVA; CCC was 52.5% for Tariff, 44.5% for PCVA, and 30.3% for InterVA. For neonates, CSMF accuracy was 0.817 for Tariff, 0.719 for PCVA, and 0.629 for InterVA; CCC varied from 47.3% to 50.3% for the three automated methods, 29.3% for PCVA, and 19.4% for InterVA. The method with the highest sensitivity for a specific cause varied by cause. CONCLUSIONS: Physician review of verbal autopsy questionnaires is less accurate than automated methods in determining both individual and population causes of death. Overall, Tariff performs as well or better than other methods and should be widely applied in routine mortality surveillance systems with poor cause of death certification practices. BioMed Central 2014-01-09 /pmc/articles/PMC3891983/ /pubmed/24405531 http://dx.doi.org/10.1186/1741-7015-12-5 Text en Copyright © 2014 Murray et al.; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research Article
Murray, Christopher JL
Lozano, Rafael
Flaxman, Abraham D
Serina, Peter
Phillips, David
Stewart, Andrea
James, Spencer L
Vahdatpour, Alireza
Atkinson, Charles
Freeman, Michael K
Ohno, Summer Lockett
Black, Robert
Ali, Said Mohammed
Baqui, Abdullah H
Dandona, Lalit
Dantzer, Emily
Darmstadt, Gary L
Das, Vinita
Dhingra, Usha
Dutta, Arup
Fawzi, Wafaie
Gómez, Sara
Hernández, Bernardo
Joshi, Rohina
Kalter, Henry D
Kumar, Aarti
Kumar, Vishwajeet
Lucero, Marilla
Mehta, Saurabh
Neal, Bruce
Praveen, Devarsetty
Premji, Zul
Ramírez-Villalobos, Dolores
Remolador, Hazel
Riley, Ian
Romero, Minerva
Said, Mwanaidi
Sanvictores, Diozele
Sazawal, Sunil
Tallo, Veronica
Lopez, Alan D
Using verbal autopsy to measure causes of death: the comparative performance of existing methods
title Using verbal autopsy to measure causes of death: the comparative performance of existing methods
title_full Using verbal autopsy to measure causes of death: the comparative performance of existing methods
title_fullStr Using verbal autopsy to measure causes of death: the comparative performance of existing methods
title_full_unstemmed Using verbal autopsy to measure causes of death: the comparative performance of existing methods
title_short Using verbal autopsy to measure causes of death: the comparative performance of existing methods
title_sort using verbal autopsy to measure causes of death: the comparative performance of existing methods
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3891983/
https://www.ncbi.nlm.nih.gov/pubmed/24405531
http://dx.doi.org/10.1186/1741-7015-12-5
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