Cargando…

Quantitative prediction of the effect of genetic variation using hidden Markov models

BACKGROUND: With the development of sequencing technologies, more and more sequence variants are available for investigation. Different classes of variants in the human genome have been identified, including single nucleotide substitutions, insertion and deletion, and large structural variations suc...

Descripción completa

Detalles Bibliográficos
Autores principales:	Liu, Mingming, Watson, Layne T, Zhang, Liqing
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2014
Materias:	Methodology Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3893606/ https://www.ncbi.nlm.nih.gov/pubmed/24405700 http://dx.doi.org/10.1186/1471-2105-15-5

Ejemplares similares

A Network of SCOP Hidden Markov Models and Its Analysis
por: Zhang, Liqing, et al.
Publicado: (2011)

Predicting nucleosome positioning using a duration Hidden Markov Model
por: Xi, Liqun, et al.
Publicado: (2010)

Predicting enhancers in mammalian genomes using supervised hidden Markov models
por: Zehnder, Tobias, et al.
Publicado: (2019)

Fast MCMC sampling for hidden markov models to determine copy number variations
por: Mahmud, Md Pavel, et al.
Publicado: (2011)

Error statistics of hidden Markov model and hidden Boltzmann model results
por: Newberg, Lee A
Publicado: (2009)

Riboswitch Detection Using Profile Hidden Markov Models
por: Singh, Payal, et al.
Publicado: (2009)

Flexible hidden Markov models for behaviour-dependent habitat selection
por: Klappstein, N. J., et al.
Publicado: (2023)

Predicting the combined effect of multiple genetic variants
por: Liu, Mingming, et al.
Publicado: (2015)

Inference of mechanical states of intestinal motor activity using hidden Markov models
por: Wiklendt, Lukasz, et al.
Publicado: (2013)

A Mixture Model and a Hidden Markov Model to Simultaneously Detect Recombination Breakpoints and Reconstruct Phylogenies
por: Boussau, Bastien, et al.
Publicado: (2009)

Implementing EM and Viterbi algorithms for Hidden Markov Model in linear memory
por: Churbanov, Alexander, et al.
Publicado: (2008)

HaMStR: Profile hidden markov model based search for orthologs in ESTs
por: Ebersberger, Ingo, et al.
Publicado: (2009)

Replicability analysis in genome-wide association studies via Cartesian hidden Markov models
por: Wang, Pengfei, et al.
Publicado: (2019)

A new algorithm to train hidden Markov models for biological sequences with partial labels
por: Li, Jiefu, et al.
Publicado: (2021)

Auto-HMM-LMF: feature selection based method for prediction of drug response via autoencoder and hidden Markov model
por: Emdadi, Akram, et al.
Publicado: (2021)

HMMvar-func: a new method for predicting the functional outcome of genetic variants
por: Liu, Mingming, et al.
Publicado: (2015)

Gapped alignment of protein sequence motifs through Monte Carlo optimization of a hidden Markov model
por: Neuwald, Andrew F, et al.
Publicado: (2004)

A hidden Markov model approach for determining expression from genomic tiling micro arrays
por: Munch, Kasper, et al.
Publicado: (2006)

A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes
por: Schultz, Anne-Kathrin, et al.
Publicado: (2006)

Fitting hidden Markov models of protein domains to a target species: application to Plasmodium falciparum
por: Terrapon, Nicolas, et al.
Publicado: (2012)

A Hidden Markov Model to estimate population mixture and allelic copy-numbers in cancers using Affymetrix SNP arrays
por: Lamy, Philippe, et al.
Publicado: (2007)

A hidden Markov model for reconstructing animal paths from solar geolocation loggers using templates for light intensity
por: Rakhimberdiev, Eldar, et al.
Publicado: (2015)

Quantitative analysis of peroxisome tracks using a Hidden Markov Model
por: Svensson, Carl-Magnus, et al.
Publicado: (2023)

RSpred, a set of Hidden Markov Models to detect and classify the RIFIN and STEVOR proteins of Plasmodium falciparum
por: Joannin, Nicolas, et al.
Publicado: (2011)

A hidden Markov tree model for testing multiple hypotheses corresponding to Gene Ontology gene sets
por: Liang, Kun, et al.
Publicado: (2018)

Identification and characterization of subfamily-specific signatures in a large protein superfamily by a hidden Markov model approach
por: Truong, Kevin, et al.
Publicado: (2002)

Large-scale multiple testing in genome-wide association studies via region-specific hidden Markov models
por: Xiao, Jian, et al.
Publicado: (2013)

hsegHMM: hidden Markov model-based allele-specific copy number alteration analysis accounting for hypersegmentation
por: Choo-Wosoba, Hyoyoung, et al.
Publicado: (2018)

Variational Beta Process Hidden Markov Models with Shared Hidden States for Trajectory Recognition
por: Zhao, Jing, et al.
Publicado: (2021)

Parsimonious hidden Markov models for matrix-variate longitudinal data
por: Tomarchio, Salvatore D., et al.
Publicado: (2022)

Hidden markov model for the prediction of transmembrane proteins using MATLAB
por: Chaturvedi, Navaneet, et al.
Publicado: (2011)

Inference in Hidden Markov Models
por: Cappe, Olivier
Publicado: (2005)

Hidden Markov Modeling with HMMTeacher
por: Fuentes-Beals, Camilo, et al.
Publicado: (2022)

Predicting Patient-ventilator Asynchronies with Hidden Markov Models
por: Marchuk, Yaroslav, et al.
Publicado: (2018)

Hidden Markov Models and Their Application for Predicting Failure Events
por: Hofmann, Paul, et al.
Publicado: (2020)

Regression hidden Markov modeling reveals heterogeneous gene expression regulation: a case study in mouse embryonic stem cells
por: Lee, Yeonok, et al.
Publicado: (2014)

A Hidden Markov Model for identifying essential and growth-defect regions in bacterial genomes from transposon insertion sequencing data
por: DeJesus, Michael A, et al.
Publicado: (2013)

Profile hidden Markov model sequence analysis can help remove putative pseudogenes from DNA barcoding and metabarcoding datasets
por: Porter, T. M., et al.
Publicado: (2021)

HMM-ModE – Improved classification using profile hidden Markov models by optimising the discrimination threshold and modifying emission probabilities with negative training sequences
por: Srivastava, Prashant K, et al.
Publicado: (2007)

Hidden Markov Model Variants and their Application
por: Winters-Hilt, Stephen
Publicado: (2006)

Cannot write session to /tmp/vufind_sessions/sess_osdkha54t6nc450colvhvlbad3