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A framework for streamlining research workflow in neuroscience and psychology

Successful accumulation of knowledge is critically dependent on the ability to verify and replicate every part of scientific conduct. However, such principles are difficult to enact when researchers continue to resort on ad-hoc workflows and with poorly maintained code base. In this paper I examine...

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Detalles Bibliográficos
Autor principal: Kubilius, Jonas
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3894454/
https://www.ncbi.nlm.nih.gov/pubmed/24478691
http://dx.doi.org/10.3389/fninf.2013.00052
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author Kubilius, Jonas
author_facet Kubilius, Jonas
author_sort Kubilius, Jonas
collection PubMed
description Successful accumulation of knowledge is critically dependent on the ability to verify and replicate every part of scientific conduct. However, such principles are difficult to enact when researchers continue to resort on ad-hoc workflows and with poorly maintained code base. In this paper I examine the needs of neuroscience and psychology community, and introduce psychopy_ext, a unifying framework that seamlessly integrates popular experiment building, analysis and manuscript preparation tools by choosing reasonable defaults and implementing relatively rigid patterns of workflow. This structure allows for automation of multiple tasks, such as generated user interfaces, unit testing, control analyses of stimuli, single-command access to descriptive statistics, and publication quality plotting. Taken together, psychopy_ext opens an exciting possibility for a faster, more robust code development and collaboration for researchers.
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spelling pubmed-38944542014-01-29 A framework for streamlining research workflow in neuroscience and psychology Kubilius, Jonas Front Neuroinform Neuroscience Successful accumulation of knowledge is critically dependent on the ability to verify and replicate every part of scientific conduct. However, such principles are difficult to enact when researchers continue to resort on ad-hoc workflows and with poorly maintained code base. In this paper I examine the needs of neuroscience and psychology community, and introduce psychopy_ext, a unifying framework that seamlessly integrates popular experiment building, analysis and manuscript preparation tools by choosing reasonable defaults and implementing relatively rigid patterns of workflow. This structure allows for automation of multiple tasks, such as generated user interfaces, unit testing, control analyses of stimuli, single-command access to descriptive statistics, and publication quality plotting. Taken together, psychopy_ext opens an exciting possibility for a faster, more robust code development and collaboration for researchers. Frontiers Media S.A. 2014-01-17 /pmc/articles/PMC3894454/ /pubmed/24478691 http://dx.doi.org/10.3389/fninf.2013.00052 Text en Copyright © 2014 Kubilius. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Kubilius, Jonas
A framework for streamlining research workflow in neuroscience and psychology
title A framework for streamlining research workflow in neuroscience and psychology
title_full A framework for streamlining research workflow in neuroscience and psychology
title_fullStr A framework for streamlining research workflow in neuroscience and psychology
title_full_unstemmed A framework for streamlining research workflow in neuroscience and psychology
title_short A framework for streamlining research workflow in neuroscience and psychology
title_sort framework for streamlining research workflow in neuroscience and psychology
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3894454/
https://www.ncbi.nlm.nih.gov/pubmed/24478691
http://dx.doi.org/10.3389/fninf.2013.00052
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