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A framework for streamlining research workflow in neuroscience and psychology
Successful accumulation of knowledge is critically dependent on the ability to verify and replicate every part of scientific conduct. However, such principles are difficult to enact when researchers continue to resort on ad-hoc workflows and with poorly maintained code base. In this paper I examine...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2014
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3894454/ https://www.ncbi.nlm.nih.gov/pubmed/24478691 http://dx.doi.org/10.3389/fninf.2013.00052 |
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author | Kubilius, Jonas |
author_facet | Kubilius, Jonas |
author_sort | Kubilius, Jonas |
collection | PubMed |
description | Successful accumulation of knowledge is critically dependent on the ability to verify and replicate every part of scientific conduct. However, such principles are difficult to enact when researchers continue to resort on ad-hoc workflows and with poorly maintained code base. In this paper I examine the needs of neuroscience and psychology community, and introduce psychopy_ext, a unifying framework that seamlessly integrates popular experiment building, analysis and manuscript preparation tools by choosing reasonable defaults and implementing relatively rigid patterns of workflow. This structure allows for automation of multiple tasks, such as generated user interfaces, unit testing, control analyses of stimuli, single-command access to descriptive statistics, and publication quality plotting. Taken together, psychopy_ext opens an exciting possibility for a faster, more robust code development and collaboration for researchers. |
format | Online Article Text |
id | pubmed-3894454 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-38944542014-01-29 A framework for streamlining research workflow in neuroscience and psychology Kubilius, Jonas Front Neuroinform Neuroscience Successful accumulation of knowledge is critically dependent on the ability to verify and replicate every part of scientific conduct. However, such principles are difficult to enact when researchers continue to resort on ad-hoc workflows and with poorly maintained code base. In this paper I examine the needs of neuroscience and psychology community, and introduce psychopy_ext, a unifying framework that seamlessly integrates popular experiment building, analysis and manuscript preparation tools by choosing reasonable defaults and implementing relatively rigid patterns of workflow. This structure allows for automation of multiple tasks, such as generated user interfaces, unit testing, control analyses of stimuli, single-command access to descriptive statistics, and publication quality plotting. Taken together, psychopy_ext opens an exciting possibility for a faster, more robust code development and collaboration for researchers. Frontiers Media S.A. 2014-01-17 /pmc/articles/PMC3894454/ /pubmed/24478691 http://dx.doi.org/10.3389/fninf.2013.00052 Text en Copyright © 2014 Kubilius. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neuroscience Kubilius, Jonas A framework for streamlining research workflow in neuroscience and psychology |
title | A framework for streamlining research workflow in neuroscience and psychology |
title_full | A framework for streamlining research workflow in neuroscience and psychology |
title_fullStr | A framework for streamlining research workflow in neuroscience and psychology |
title_full_unstemmed | A framework for streamlining research workflow in neuroscience and psychology |
title_short | A framework for streamlining research workflow in neuroscience and psychology |
title_sort | framework for streamlining research workflow in neuroscience and psychology |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3894454/ https://www.ncbi.nlm.nih.gov/pubmed/24478691 http://dx.doi.org/10.3389/fninf.2013.00052 |
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