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A new paradigm for transcription factor TFIIB functionality

Experimental and bioinformatic studies of transcription initiation by RNA polymerase II (RNAP2) have revealed a mechanism of RNAP2 transcription initiation less uniform across gene promoters than initially thought. However, the general transcription factor TFIIB is presumed to be universally require...

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Autores principales: Gelev, Vladimir, Zabolotny, Janice M., Lange, Martin, Hiromura, Makoto, Yoo, Sang Wook, Orlando, Joseph S., Kushnir, Anna, Horikoshi, Nobuo, Paquet, Eric, Bachvarov, Dimcho, Schaffer, Priscilla A., Usheva, Anny
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3895905/
https://www.ncbi.nlm.nih.gov/pubmed/24441171
http://dx.doi.org/10.1038/srep03664
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author Gelev, Vladimir
Zabolotny, Janice M.
Lange, Martin
Hiromura, Makoto
Yoo, Sang Wook
Orlando, Joseph S.
Kushnir, Anna
Horikoshi, Nobuo
Paquet, Eric
Bachvarov, Dimcho
Schaffer, Priscilla A.
Usheva, Anny
author_facet Gelev, Vladimir
Zabolotny, Janice M.
Lange, Martin
Hiromura, Makoto
Yoo, Sang Wook
Orlando, Joseph S.
Kushnir, Anna
Horikoshi, Nobuo
Paquet, Eric
Bachvarov, Dimcho
Schaffer, Priscilla A.
Usheva, Anny
author_sort Gelev, Vladimir
collection PubMed
description Experimental and bioinformatic studies of transcription initiation by RNA polymerase II (RNAP2) have revealed a mechanism of RNAP2 transcription initiation less uniform across gene promoters than initially thought. However, the general transcription factor TFIIB is presumed to be universally required for RNAP2 transcription initiation. Based on bioinformatic analysis of data and effects of TFIIB knockdown in primary and transformed cell lines on cellular functionality and global gene expression, we report that TFIIB is dispensable for transcription of many human promoters, but is essential for herpes simplex virus-1 (HSV-1) gene transcription and replication. We report a novel cell cycle TFIIB regulation and localization of the acetylated TFIIB variant on the transcriptionally silent mitotic chromatids. Taken together, these results establish a new paradigm for TFIIB functionality in human gene expression, which when downregulated has potent anti-viral effects.
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spelling pubmed-38959052014-01-21 A new paradigm for transcription factor TFIIB functionality Gelev, Vladimir Zabolotny, Janice M. Lange, Martin Hiromura, Makoto Yoo, Sang Wook Orlando, Joseph S. Kushnir, Anna Horikoshi, Nobuo Paquet, Eric Bachvarov, Dimcho Schaffer, Priscilla A. Usheva, Anny Sci Rep Article Experimental and bioinformatic studies of transcription initiation by RNA polymerase II (RNAP2) have revealed a mechanism of RNAP2 transcription initiation less uniform across gene promoters than initially thought. However, the general transcription factor TFIIB is presumed to be universally required for RNAP2 transcription initiation. Based on bioinformatic analysis of data and effects of TFIIB knockdown in primary and transformed cell lines on cellular functionality and global gene expression, we report that TFIIB is dispensable for transcription of many human promoters, but is essential for herpes simplex virus-1 (HSV-1) gene transcription and replication. We report a novel cell cycle TFIIB regulation and localization of the acetylated TFIIB variant on the transcriptionally silent mitotic chromatids. Taken together, these results establish a new paradigm for TFIIB functionality in human gene expression, which when downregulated has potent anti-viral effects. Nature Publishing Group 2014-01-20 /pmc/articles/PMC3895905/ /pubmed/24441171 http://dx.doi.org/10.1038/srep03664 Text en Copyright © 2014, Macmillan Publishers Limited. All rights reserved http://creativecommons.org/licenses/by-nc-nd/3.0/ This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-nd/3.0/
spellingShingle Article
Gelev, Vladimir
Zabolotny, Janice M.
Lange, Martin
Hiromura, Makoto
Yoo, Sang Wook
Orlando, Joseph S.
Kushnir, Anna
Horikoshi, Nobuo
Paquet, Eric
Bachvarov, Dimcho
Schaffer, Priscilla A.
Usheva, Anny
A new paradigm for transcription factor TFIIB functionality
title A new paradigm for transcription factor TFIIB functionality
title_full A new paradigm for transcription factor TFIIB functionality
title_fullStr A new paradigm for transcription factor TFIIB functionality
title_full_unstemmed A new paradigm for transcription factor TFIIB functionality
title_short A new paradigm for transcription factor TFIIB functionality
title_sort new paradigm for transcription factor tfiib functionality
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3895905/
https://www.ncbi.nlm.nih.gov/pubmed/24441171
http://dx.doi.org/10.1038/srep03664
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