Cargando…

kruX: matrix-based non-parametric eQTL discovery

BACKGROUND: The Kruskal-Wallis test is a popular non-parametric statistical test for identifying expression quantitative trait loci (eQTLs) from genome-wide data due to its robustness against variations in the underlying genetic model and expression trait distribution, but testing billions of marker...

Descripción completa

Detalles Bibliográficos
Autores principales:	Qi, Jianlong, Asl, Hassan Foroughi, Björkegren, Johan, Michoel, Tom
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2014
Materias:	Software
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3897912/ https://www.ncbi.nlm.nih.gov/pubmed/24423115 http://dx.doi.org/10.1186/1471-2105-15-11

Ejemplares similares

Meta-eQTL: a tool set for flexible eQTL meta-analysis
por: Di Narzo, Antonio Fabio, et al.
Publicado: (2014)

eQTL Viewer: visualizing how sequence variation affects genome-wide transcription
por: Zou, Wei, et al.
Publicado: (2007)

eQTpLot: a user-friendly R package for the visualization of colocalization between eQTL and GWAS signals
por: Drivas, Theodore G., et al.
Publicado: (2021)

The Power of Single-Cell RNA Sequencing in eQTL Discovery
por: Maria, Maleeha, et al.
Publicado: (2022)

Power, false discovery rate and Winner’s Curse in eQTL studies
por: Huang, Qin Qin, et al.
Publicado: (2018)

eQTLs as causal instruments for the reconstruction of hormone linked gene networks
por: Bankier, Sean, et al.
Publicado: (2022)

eQTL discovery and their association with severe equine asthma in European Warmblood horses
por: Mason, Victor C., et al.
Publicado: (2018)

Reveal—visual eQTL analytics
por: Jäger, Günter, et al.
Publicado: (2012)

Genome-wide QTL and eQTL analyses using Mendel
por: Zhou, Hua, et al.
Publicado: (2016)

Discovery of Candidate Genes for Muscle Traits Based on GWAS Supported by eQTL-analysis
por: Ponsuksili, Siriluck, et al.
Publicado: (2014)

eQTL Epistasis – Challenges and Computational Approaches
por: Huang, Yang, et al.
Publicado: (2013)

SNP eQTL status and eQTL density in the adjacent region of the SNP are associated with its statistical significance in GWA studies
por: Gorlov, Ivan, et al.
Publicado: (2019)

Characterizing regulatory path motifs in integrated networks using perturbational data
por: Joshi, Anagha, et al.
Publicado: (2010)

Discovery of eQTL Alleles Associated with Autism Spectrum Disorder: A Case–Control Study
por: Hickman, Allison R., et al.
Publicado: (2022)

Integrative Analysis of Low- and High-Resolution eQTL
por: Loguercio, Salvatore, et al.
Publicado: (2010)

Data-driven assessment of eQTL mapping methods
por: Michaelson, Jacob J, et al.
Publicado: (2010)

RNA-Seq optimization with eQTL gold standards
por: Ellis, Shannon E, et al.
Publicado: (2013)

Robust Linear Models for Cis-eQTL Analysis
por: Rantalainen, Mattias, et al.
Publicado: (2015)

Cross-tissue eQTL enrichment of associations in schizophrenia
por: Bettella, Francesco, et al.
Publicado: (2018)

Dissecting the eQTL Micro-Architecture in Caenorhabditis elegans
por: Sterken, Mark G., et al.
Publicado: (2020)

Estimating gene-level false discovery probability improves eQTL statistical fine-mapping precision
por: Wang, Qingbo S, et al.
Publicado: (2023)

PancanQTL: systematic identification of cis-eQTLs and trans-eQTLs in 33 cancer types
por: Gong, Jing, et al.
Publicado: (2018)

Overlap between eQTL and QTL associated with production traits and fertility in dairy cattle
por: van den Berg, I., et al.
Publicado: (2019)

Model-based clustering of multi-tissue gene expression data
por: Erola, Pau, et al.
Publicado: (2020)

FastMap: Fast eQTL mapping in homozygous populations
por: Gatti, Daniel M., et al.
Publicado: (2009)

Comparison of Strategies to Detect Epistasis from eQTL Data
por: Kapur, Karen, et al.
Publicado: (2011)

seeQTL: a searchable database for human eQTLs
por: Xia, Kai, et al.
Publicado: (2012)

An eQTL Analysis of Partial Resistance to Puccinia hordei in Barley
por: Chen, Xinwei, et al.
Publicado: (2010)

Graph-regularized dual Lasso for robust eQTL mapping
por: Cheng, Wei, et al.
Publicado: (2014)

Cell Specific eQTL Analysis without Sorting Cells
por: Westra, Harm-Jan, et al.
Publicado: (2015)

Mapping eQTL by leveraging multiple tissues and DNA methylation
por: Acharya, Chaitanya R., et al.
Publicado: (2017)

Colon-specific eQTL analysis to inform on functional SNPs
por: Moreno, Victor, et al.
Publicado: (2018)

Unique Allelic eQTL Clusters in Human MHC Haplotypes
por: Lam, Tze Hau, et al.
Publicado: (2017)

Incorporation of DNA methylation into eQTL mapping in African Americans
por: Singh, Anmol, et al.
Publicado: (2021)

Connectivity in eQTL networks dictates reproducibility and genomic properties
por: Gaynor, Sheila M., et al.
Publicado: (2022)

eQTL Studies: from Bulk Tissues to Single Cells
por: Zhang, Jingfei, et al.
Publicado: (2023)

QTLTableMiner(++): semantic mining of QTL tables in scientific articles
por: Singh, Gurnoor, et al.
Publicado: (2018)

Integrate GWAS, eQTL, and mQTL Data to Identify Alzheimer’s Disease-Related Genes
por: Zhao, Tianyi, et al.
Publicado: (2019)

AeQTL: eQTL analysis using region-based aggregation of rare genomic variants
por: Dong, Guanlan, et al.
Publicado: (2021)

AWclust: point-and-click software for non-parametric population structure analysis
por: Gao, Xiaoyi, et al.
Publicado: (2008)

Cannot write session to /tmp/vufind_sessions/sess_g7kq594vjcjq3hobklo9s411fo