Cargando…

The Fiber Walk: A Model of Tip-Driven Growth with Lateral Expansion

Tip-driven growth processes underlie the development of many plants. To date, tip-driven growth processes have been modeled as an elongating path or series of segments, without taking into account lateral expansion during elongation. Instead, models of growth often introduce an explicit thickness by...

Descripción completa

Detalles Bibliográficos
Autores principales: Bucksch, Alexander, Turk, Greg, Weitz, Joshua S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3899046/
https://www.ncbi.nlm.nih.gov/pubmed/24465607
http://dx.doi.org/10.1371/journal.pone.0085585
_version_ 1782300511971573760
author Bucksch, Alexander
Turk, Greg
Weitz, Joshua S.
author_facet Bucksch, Alexander
Turk, Greg
Weitz, Joshua S.
author_sort Bucksch, Alexander
collection PubMed
description Tip-driven growth processes underlie the development of many plants. To date, tip-driven growth processes have been modeled as an elongating path or series of segments, without taking into account lateral expansion during elongation. Instead, models of growth often introduce an explicit thickness by expanding the area around the completed elongated path. Modeling expansion in this way can lead to contradictions in the physical plausibility of the resulting surface and to uncertainty about how the object reached certain regions of space. Here, we introduce fiber walks as a self-avoiding random walk model for tip-driven growth processes that includes lateral expansion. In 2D, the fiber walk takes place on a square lattice and the space occupied by the fiber is modeled as a lateral contraction of the lattice. This contraction influences the possible subsequent steps of the fiber walk. The boundary of the area consumed by the contraction is derived as the dual of the lattice faces adjacent to the fiber. We show that fiber walks generate fibers that have well-defined curvatures, and thus enable the identification of the process underlying the occupancy of physical space. Hence, fiber walks provide a base from which to model both the extension and expansion of physical biological objects with finite thickness.
format Online
Article
Text
id pubmed-3899046
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-38990462014-01-24 The Fiber Walk: A Model of Tip-Driven Growth with Lateral Expansion Bucksch, Alexander Turk, Greg Weitz, Joshua S. PLoS One Research Article Tip-driven growth processes underlie the development of many plants. To date, tip-driven growth processes have been modeled as an elongating path or series of segments, without taking into account lateral expansion during elongation. Instead, models of growth often introduce an explicit thickness by expanding the area around the completed elongated path. Modeling expansion in this way can lead to contradictions in the physical plausibility of the resulting surface and to uncertainty about how the object reached certain regions of space. Here, we introduce fiber walks as a self-avoiding random walk model for tip-driven growth processes that includes lateral expansion. In 2D, the fiber walk takes place on a square lattice and the space occupied by the fiber is modeled as a lateral contraction of the lattice. This contraction influences the possible subsequent steps of the fiber walk. The boundary of the area consumed by the contraction is derived as the dual of the lattice faces adjacent to the fiber. We show that fiber walks generate fibers that have well-defined curvatures, and thus enable the identification of the process underlying the occupancy of physical space. Hence, fiber walks provide a base from which to model both the extension and expansion of physical biological objects with finite thickness. Public Library of Science 2014-01-22 /pmc/articles/PMC3899046/ /pubmed/24465607 http://dx.doi.org/10.1371/journal.pone.0085585 Text en © 2014 Bucksch et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Bucksch, Alexander
Turk, Greg
Weitz, Joshua S.
The Fiber Walk: A Model of Tip-Driven Growth with Lateral Expansion
title The Fiber Walk: A Model of Tip-Driven Growth with Lateral Expansion
title_full The Fiber Walk: A Model of Tip-Driven Growth with Lateral Expansion
title_fullStr The Fiber Walk: A Model of Tip-Driven Growth with Lateral Expansion
title_full_unstemmed The Fiber Walk: A Model of Tip-Driven Growth with Lateral Expansion
title_short The Fiber Walk: A Model of Tip-Driven Growth with Lateral Expansion
title_sort fiber walk: a model of tip-driven growth with lateral expansion
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3899046/
https://www.ncbi.nlm.nih.gov/pubmed/24465607
http://dx.doi.org/10.1371/journal.pone.0085585
work_keys_str_mv AT buckschalexander thefiberwalkamodeloftipdrivengrowthwithlateralexpansion
AT turkgreg thefiberwalkamodeloftipdrivengrowthwithlateralexpansion
AT weitzjoshuas thefiberwalkamodeloftipdrivengrowthwithlateralexpansion
AT buckschalexander fiberwalkamodeloftipdrivengrowthwithlateralexpansion
AT turkgreg fiberwalkamodeloftipdrivengrowthwithlateralexpansion
AT weitzjoshuas fiberwalkamodeloftipdrivengrowthwithlateralexpansion