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CASMI: And the Winner is ..

The Critical Assessment of Small Molecule Identification (CASMI) Contest was founded in 2012 to provide scientists with a common open dataset to evaluate their identification methods. In this review, we summarize the submissions, evaluate procedures and discuss the results. We received five submissi...

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Detalles Bibliográficos
Autores principales: Schymanski, Emma L., Neumann, Steffen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3901266/
https://www.ncbi.nlm.nih.gov/pubmed/24957999
http://dx.doi.org/10.3390/metabo3020412
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author Schymanski, Emma L.
Neumann, Steffen
author_facet Schymanski, Emma L.
Neumann, Steffen
author_sort Schymanski, Emma L.
collection PubMed
description The Critical Assessment of Small Molecule Identification (CASMI) Contest was founded in 2012 to provide scientists with a common open dataset to evaluate their identification methods. In this review, we summarize the submissions, evaluate procedures and discuss the results. We received five submissions (three external, two internal) for LC–MS Category 1 (best molecular formula) and six submissions (three external, three internal) for LC–MS Category 2 (best molecular structure). No external submissions were received for the GC–MS Categories 3 and 4. The team of Dunn et al. from Birmingham had the most answers in the 1(st) place for Category 1, while Category 2 was won by H. Oberacher. Despite the low number of participants, the external and internal submissions cover a broad range of identification strategies, including expert knowledge, database searching, automated methods and structure generation. The results of Category 1 show that complementing automated strategies with (manual) expert knowledge was the most successful approach, while no automated method could compete with the power of spectral searching for Category 2—if the challenge was present in a spectral library. Every participant topped at least one challenge, showing that different approaches are still necessary for interpretation diversity.
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spelling pubmed-39012662014-05-27 CASMI: And the Winner is .. Schymanski, Emma L. Neumann, Steffen Metabolites Review The Critical Assessment of Small Molecule Identification (CASMI) Contest was founded in 2012 to provide scientists with a common open dataset to evaluate their identification methods. In this review, we summarize the submissions, evaluate procedures and discuss the results. We received five submissions (three external, two internal) for LC–MS Category 1 (best molecular formula) and six submissions (three external, three internal) for LC–MS Category 2 (best molecular structure). No external submissions were received for the GC–MS Categories 3 and 4. The team of Dunn et al. from Birmingham had the most answers in the 1(st) place for Category 1, while Category 2 was won by H. Oberacher. Despite the low number of participants, the external and internal submissions cover a broad range of identification strategies, including expert knowledge, database searching, automated methods and structure generation. The results of Category 1 show that complementing automated strategies with (manual) expert knowledge was the most successful approach, while no automated method could compete with the power of spectral searching for Category 2—if the challenge was present in a spectral library. Every participant topped at least one challenge, showing that different approaches are still necessary for interpretation diversity. MDPI 2013-05-24 /pmc/articles/PMC3901266/ /pubmed/24957999 http://dx.doi.org/10.3390/metabo3020412 Text en © 2013 by the authors; licensee MDPI, Basel, Switzerland. http://creativecommons.org/licenses/by/3.0/ This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/3.0/).
spellingShingle Review
Schymanski, Emma L.
Neumann, Steffen
CASMI: And the Winner is ..
title CASMI: And the Winner is ..
title_full CASMI: And the Winner is ..
title_fullStr CASMI: And the Winner is ..
title_full_unstemmed CASMI: And the Winner is ..
title_short CASMI: And the Winner is ..
title_sort casmi: and the winner is ..
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3901266/
https://www.ncbi.nlm.nih.gov/pubmed/24957999
http://dx.doi.org/10.3390/metabo3020412
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