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CASMI: And the Winner is ..
The Critical Assessment of Small Molecule Identification (CASMI) Contest was founded in 2012 to provide scientists with a common open dataset to evaluate their identification methods. In this review, we summarize the submissions, evaluate procedures and discuss the results. We received five submissi...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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MDPI
2013
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3901266/ https://www.ncbi.nlm.nih.gov/pubmed/24957999 http://dx.doi.org/10.3390/metabo3020412 |
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author | Schymanski, Emma L. Neumann, Steffen |
author_facet | Schymanski, Emma L. Neumann, Steffen |
author_sort | Schymanski, Emma L. |
collection | PubMed |
description | The Critical Assessment of Small Molecule Identification (CASMI) Contest was founded in 2012 to provide scientists with a common open dataset to evaluate their identification methods. In this review, we summarize the submissions, evaluate procedures and discuss the results. We received five submissions (three external, two internal) for LC–MS Category 1 (best molecular formula) and six submissions (three external, three internal) for LC–MS Category 2 (best molecular structure). No external submissions were received for the GC–MS Categories 3 and 4. The team of Dunn et al. from Birmingham had the most answers in the 1(st) place for Category 1, while Category 2 was won by H. Oberacher. Despite the low number of participants, the external and internal submissions cover a broad range of identification strategies, including expert knowledge, database searching, automated methods and structure generation. The results of Category 1 show that complementing automated strategies with (manual) expert knowledge was the most successful approach, while no automated method could compete with the power of spectral searching for Category 2—if the challenge was present in a spectral library. Every participant topped at least one challenge, showing that different approaches are still necessary for interpretation diversity. |
format | Online Article Text |
id | pubmed-3901266 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-39012662014-05-27 CASMI: And the Winner is .. Schymanski, Emma L. Neumann, Steffen Metabolites Review The Critical Assessment of Small Molecule Identification (CASMI) Contest was founded in 2012 to provide scientists with a common open dataset to evaluate their identification methods. In this review, we summarize the submissions, evaluate procedures and discuss the results. We received five submissions (three external, two internal) for LC–MS Category 1 (best molecular formula) and six submissions (three external, three internal) for LC–MS Category 2 (best molecular structure). No external submissions were received for the GC–MS Categories 3 and 4. The team of Dunn et al. from Birmingham had the most answers in the 1(st) place for Category 1, while Category 2 was won by H. Oberacher. Despite the low number of participants, the external and internal submissions cover a broad range of identification strategies, including expert knowledge, database searching, automated methods and structure generation. The results of Category 1 show that complementing automated strategies with (manual) expert knowledge was the most successful approach, while no automated method could compete with the power of spectral searching for Category 2—if the challenge was present in a spectral library. Every participant topped at least one challenge, showing that different approaches are still necessary for interpretation diversity. MDPI 2013-05-24 /pmc/articles/PMC3901266/ /pubmed/24957999 http://dx.doi.org/10.3390/metabo3020412 Text en © 2013 by the authors; licensee MDPI, Basel, Switzerland. http://creativecommons.org/licenses/by/3.0/ This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/3.0/). |
spellingShingle | Review Schymanski, Emma L. Neumann, Steffen CASMI: And the Winner is .. |
title | CASMI: And the Winner is .. |
title_full | CASMI: And the Winner is .. |
title_fullStr | CASMI: And the Winner is .. |
title_full_unstemmed | CASMI: And the Winner is .. |
title_short | CASMI: And the Winner is .. |
title_sort | casmi: and the winner is .. |
topic | Review |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3901266/ https://www.ncbi.nlm.nih.gov/pubmed/24957999 http://dx.doi.org/10.3390/metabo3020412 |
work_keys_str_mv | AT schymanskiemmal casmiandthewinneris AT neumannsteffen casmiandthewinneris |