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An a posteriori measure of network modularity
Measuring the modularity of networks, and how it deviates from random expectations, important to understand their structure and emerging properties. Several measures exist to assess modularity, which when applied to the same network, can return both different modularity values (i.e. different estima...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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F1000Research
2013
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3901540/ https://www.ncbi.nlm.nih.gov/pubmed/24555062 http://dx.doi.org/10.12688/f1000research.2-130.v3 |
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author | Poisot, Timothée |
author_facet | Poisot, Timothée |
author_sort | Poisot, Timothée |
collection | PubMed |
description | Measuring the modularity of networks, and how it deviates from random expectations, important to understand their structure and emerging properties. Several measures exist to assess modularity, which when applied to the same network, can return both different modularity values (i.e. different estimates of how modular the network is) and different module compositions (i.e. different groups of species forming said modules). More importantly, as each optimization method uses a different optimization criterion, there is a need to have an a posteriori measure serving as an equivalent of a goodness-of-fit. In this article, I propose such a measure of modularity, which is simply defined as the ratio of interactions established between members of the same modules vs. members of different modules. I apply this measure to a large dataset of 290 ecological networks representing host–parasite (bipartite) and predator–prey (unipartite) interactions, to show how the results are easy to interpret and present especially to a broad audience not familiar with modularity analyses, but still can reveal new features about modularity and the ways to measure it. |
format | Online Article Text |
id | pubmed-3901540 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | F1000Research |
record_format | MEDLINE/PubMed |
spelling | pubmed-39015402014-01-28 An a posteriori measure of network modularity Poisot, Timothée F1000Res Research Article Measuring the modularity of networks, and how it deviates from random expectations, important to understand their structure and emerging properties. Several measures exist to assess modularity, which when applied to the same network, can return both different modularity values (i.e. different estimates of how modular the network is) and different module compositions (i.e. different groups of species forming said modules). More importantly, as each optimization method uses a different optimization criterion, there is a need to have an a posteriori measure serving as an equivalent of a goodness-of-fit. In this article, I propose such a measure of modularity, which is simply defined as the ratio of interactions established between members of the same modules vs. members of different modules. I apply this measure to a large dataset of 290 ecological networks representing host–parasite (bipartite) and predator–prey (unipartite) interactions, to show how the results are easy to interpret and present especially to a broad audience not familiar with modularity analyses, but still can reveal new features about modularity and the ways to measure it. F1000Research 2013-12-27 /pmc/articles/PMC3901540/ /pubmed/24555062 http://dx.doi.org/10.12688/f1000research.2-130.v3 Text en Copyright: © 2013 Poisot T http://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. http://creativecommons.org/publicdomain/zero/1.0/ Data associated with the article are available under the terms of the Creative Commons Zero "No rights reserved" data waiver (CC0 1.0 Public domain dedication). |
spellingShingle | Research Article Poisot, Timothée An a posteriori measure of network modularity |
title | An
a posteriori measure of network modularity |
title_full | An
a posteriori measure of network modularity |
title_fullStr | An
a posteriori measure of network modularity |
title_full_unstemmed | An
a posteriori measure of network modularity |
title_short | An
a posteriori measure of network modularity |
title_sort | an
a posteriori measure of network modularity |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3901540/ https://www.ncbi.nlm.nih.gov/pubmed/24555062 http://dx.doi.org/10.12688/f1000research.2-130.v3 |
work_keys_str_mv | AT poisottimothee anaposteriorimeasureofnetworkmodularity |