HTSstation: A Web Application and Open-Access Libraries for High-Throughput Sequencing Data Analysis

The HTSstation analysis portal is a suite of simple web forms coupled to modular analysis pipelines for various applications of High-Throughput Sequencing including ChIP-seq, RNA-seq, 4C-seq and re-sequencing. HTSstation offers biologists the possibility to rapidly investigate their HTS data using a...

Descripción completa

Detalles Bibliográficos
Autores principales: David, Fabrice P. A., Delafontaine, Julien, Carat, Solenne, Ross, Frederick J., Lefebvre, Gregory, Jarosz, Yohan, Sinclair, Lucas, Noordermeer, Daan, Rougemont, Jacques, Leleu, Marion
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2014
Materias:
Research Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3903476/
https://www.ncbi.nlm.nih.gov/pubmed/24475057
http://dx.doi.org/10.1371/journal.pone.0085879
_version_ 1782301092985438208
author David, Fabrice P. A.
Delafontaine, Julien
Carat, Solenne
Ross, Frederick J.
Lefebvre, Gregory
Jarosz, Yohan
Sinclair, Lucas
Noordermeer, Daan
Rougemont, Jacques
Leleu, Marion
author_facet David, Fabrice P. A.
Delafontaine, Julien
Carat, Solenne
Ross, Frederick J.
Lefebvre, Gregory
Jarosz, Yohan
Sinclair, Lucas
Noordermeer, Daan
Rougemont, Jacques
Leleu, Marion
author_sort David, Fabrice P. A.
collection PubMed
description The HTSstation analysis portal is a suite of simple web forms coupled to modular analysis pipelines for various applications of High-Throughput Sequencing including ChIP-seq, RNA-seq, 4C-seq and re-sequencing. HTSstation offers biologists the possibility to rapidly investigate their HTS data using an intuitive web application with heuristically pre-defined parameters. A number of open-source software components have been implemented and can be used to build, configure and run HTS analysis pipelines reactively. Besides, our programming framework empowers developers with the possibility to design their own workflows and integrate additional third-party software. The HTSstation web application is accessible at http://htsstation.epfl.ch.
format Online
Article
Text
id pubmed-3903476
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-39034762014-01-28 HTSstation: A Web Application and Open-Access Libraries for High-Throughput Sequencing Data Analysis David, Fabrice P. A. Delafontaine, Julien Carat, Solenne Ross, Frederick J. Lefebvre, Gregory Jarosz, Yohan Sinclair, Lucas Noordermeer, Daan Rougemont, Jacques Leleu, Marion PLoS One Research Article The HTSstation analysis portal is a suite of simple web forms coupled to modular analysis pipelines for various applications of High-Throughput Sequencing including ChIP-seq, RNA-seq, 4C-seq and re-sequencing. HTSstation offers biologists the possibility to rapidly investigate their HTS data using an intuitive web application with heuristically pre-defined parameters. A number of open-source software components have been implemented and can be used to build, configure and run HTS analysis pipelines reactively. Besides, our programming framework empowers developers with the possibility to design their own workflows and integrate additional third-party software. The HTSstation web application is accessible at http://htsstation.epfl.ch. Public Library of Science 2014-01-27 /pmc/articles/PMC3903476/ /pubmed/24475057 http://dx.doi.org/10.1371/journal.pone.0085879 Text en © 2014 David et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
David, Fabrice P. A.
Delafontaine, Julien
Carat, Solenne
Ross, Frederick J.
Lefebvre, Gregory
Jarosz, Yohan
Sinclair, Lucas
Noordermeer, Daan
Rougemont, Jacques
Leleu, Marion
HTSstation: A Web Application and Open-Access Libraries for High-Throughput Sequencing Data Analysis
title HTSstation: A Web Application and Open-Access Libraries for High-Throughput Sequencing Data Analysis
title_full HTSstation: A Web Application and Open-Access Libraries for High-Throughput Sequencing Data Analysis
title_fullStr HTSstation: A Web Application and Open-Access Libraries for High-Throughput Sequencing Data Analysis
title_full_unstemmed HTSstation: A Web Application and Open-Access Libraries for High-Throughput Sequencing Data Analysis
title_short HTSstation: A Web Application and Open-Access Libraries for High-Throughput Sequencing Data Analysis
title_sort htsstation: a web application and open-access libraries for high-throughput sequencing data analysis
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3903476/
https://www.ncbi.nlm.nih.gov/pubmed/24475057
http://dx.doi.org/10.1371/journal.pone.0085879
work_keys_str_mv AT davidfabricepa htsstationawebapplicationandopenaccesslibrariesforhighthroughputsequencingdataanalysis
AT delafontainejulien htsstationawebapplicationandopenaccesslibrariesforhighthroughputsequencingdataanalysis
AT caratsolenne htsstationawebapplicationandopenaccesslibrariesforhighthroughputsequencingdataanalysis
AT rossfrederickj htsstationawebapplicationandopenaccesslibrariesforhighthroughputsequencingdataanalysis
AT lefebvregregory htsstationawebapplicationandopenaccesslibrariesforhighthroughputsequencingdataanalysis
AT jaroszyohan htsstationawebapplicationandopenaccesslibrariesforhighthroughputsequencingdataanalysis
AT sinclairlucas htsstationawebapplicationandopenaccesslibrariesforhighthroughputsequencingdataanalysis
AT noordermeerdaan htsstationawebapplicationandopenaccesslibrariesforhighthroughputsequencingdataanalysis
AT rougemontjacques htsstationawebapplicationandopenaccesslibrariesforhighthroughputsequencingdataanalysis
AT leleumarion htsstationawebapplicationandopenaccesslibrariesforhighthroughputsequencingdataanalysis

Ejemplares similares