MycoBank gearing up for new horizons

MycoBank, a registration system for fungi established in 2004 to capture all taxonomic novelties, acts as a coordination hub between repositories such as Index Fungorum and Fungal Names. Since January 2013, registration of fungal names is a mandatory requirement for valid publication under the Inter...

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Autores principales: Robert, Vincent, Vu, Duong, Amor, Ammar Ben Hadj, van de Wiele, Nathalie, Brouwer, Carlo, Jabas, Bernard, Szoke, Szaniszlo, Dridi, Ahmed, Triki, Maher, ben Daoud, Samy, Chouchen, Oussema, Vaas, Lea, de Cock, Arthur, Stalpers, Joost A., Stalpers, Dora, Verkley, Gerard J.M., Groenewald, Marizeth, dos Santos, Felipe Borges, Stegehuis, Gerrit, Li, Wei, Wu, Linhuan, Zhang, Run, Ma, Juncai, Zhou, Miaomiao, Gorjón, Sergio Pérez, Eurwilaichitr, Lily, Ingsriswang, Supawadee, Hansen, Karen, Schoch, Conrad, Robbertse, Barbara, Irinyi, Laszlo, Meyer, Wieland, Cardinali, Gianluigi, Hawksworth, David L., Taylor, John W., Crous, Pedro W.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Mycological Association 2013
Materias:
Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3905949/
https://www.ncbi.nlm.nih.gov/pubmed/24563843
http://dx.doi.org/10.5598/imafungus.2013.04.02.16
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author Robert, Vincent
Vu, Duong
Amor, Ammar Ben Hadj
van de Wiele, Nathalie
Brouwer, Carlo
Jabas, Bernard
Szoke, Szaniszlo
Dridi, Ahmed
Triki, Maher
ben Daoud, Samy
Chouchen, Oussema
Vaas, Lea
de Cock, Arthur
Stalpers, Joost A.
Stalpers, Dora
Verkley, Gerard J.M.
Groenewald, Marizeth
dos Santos, Felipe Borges
Stegehuis, Gerrit
Li, Wei
Wu, Linhuan
Zhang, Run
Ma, Juncai
Zhou, Miaomiao
Gorjón, Sergio Pérez
Eurwilaichitr, Lily
Ingsriswang, Supawadee
Hansen, Karen
Schoch, Conrad
Robbertse, Barbara
Irinyi, Laszlo
Meyer, Wieland
Cardinali, Gianluigi
Hawksworth, David L.
Taylor, John W.
Crous, Pedro W.
author_facet Robert, Vincent
Vu, Duong
Amor, Ammar Ben Hadj
van de Wiele, Nathalie
Brouwer, Carlo
Jabas, Bernard
Szoke, Szaniszlo
Dridi, Ahmed
Triki, Maher
ben Daoud, Samy
Chouchen, Oussema
Vaas, Lea
de Cock, Arthur
Stalpers, Joost A.
Stalpers, Dora
Verkley, Gerard J.M.
Groenewald, Marizeth
dos Santos, Felipe Borges
Stegehuis, Gerrit
Li, Wei
Wu, Linhuan
Zhang, Run
Ma, Juncai
Zhou, Miaomiao
Gorjón, Sergio Pérez
Eurwilaichitr, Lily
Ingsriswang, Supawadee
Hansen, Karen
Schoch, Conrad
Robbertse, Barbara
Irinyi, Laszlo
Meyer, Wieland
Cardinali, Gianluigi
Hawksworth, David L.
Taylor, John W.
Crous, Pedro W.
author_sort Robert, Vincent
collection PubMed
description MycoBank, a registration system for fungi established in 2004 to capture all taxonomic novelties, acts as a coordination hub between repositories such as Index Fungorum and Fungal Names. Since January 2013, registration of fungal names is a mandatory requirement for valid publication under the International Code of Nomenclature for algae, fungi and plants (ICN). This review explains the database innovations that have been implemented over the past few years, and discusses new features such as advanced queries, registration of typification events (MBT numbers for lecto, epi- and neotypes), the multi-lingual database interface, the nomenclature discussion forum, annotation system, and web services with links to third parties. MycoBank has also introduced novel identification services, linking DNA sequence data to numerous related databases to enable intelligent search queries. Although MycoBank fills an important void for taxon registration, challenges for the future remain to improve links between taxonomic names and DNA data, and to also introduce a formal system for naming fungi known from DNA sequence data only. To further improve the quality of MycoBank data, remote access will now allow registered mycologists to act as MycoBank curators, using Citrix software.
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spelling pubmed-39059492014-02-21 MycoBank gearing up for new horizons Robert, Vincent Vu, Duong Amor, Ammar Ben Hadj van de Wiele, Nathalie Brouwer, Carlo Jabas, Bernard Szoke, Szaniszlo Dridi, Ahmed Triki, Maher ben Daoud, Samy Chouchen, Oussema Vaas, Lea de Cock, Arthur Stalpers, Joost A. Stalpers, Dora Verkley, Gerard J.M. Groenewald, Marizeth dos Santos, Felipe Borges Stegehuis, Gerrit Li, Wei Wu, Linhuan Zhang, Run Ma, Juncai Zhou, Miaomiao Gorjón, Sergio Pérez Eurwilaichitr, Lily Ingsriswang, Supawadee Hansen, Karen Schoch, Conrad Robbertse, Barbara Irinyi, Laszlo Meyer, Wieland Cardinali, Gianluigi Hawksworth, David L. Taylor, John W. Crous, Pedro W. IMA Fungus Article MycoBank, a registration system for fungi established in 2004 to capture all taxonomic novelties, acts as a coordination hub between repositories such as Index Fungorum and Fungal Names. Since January 2013, registration of fungal names is a mandatory requirement for valid publication under the International Code of Nomenclature for algae, fungi and plants (ICN). This review explains the database innovations that have been implemented over the past few years, and discusses new features such as advanced queries, registration of typification events (MBT numbers for lecto, epi- and neotypes), the multi-lingual database interface, the nomenclature discussion forum, annotation system, and web services with links to third parties. MycoBank has also introduced novel identification services, linking DNA sequence data to numerous related databases to enable intelligent search queries. Although MycoBank fills an important void for taxon registration, challenges for the future remain to improve links between taxonomic names and DNA data, and to also introduce a formal system for naming fungi known from DNA sequence data only. To further improve the quality of MycoBank data, remote access will now allow registered mycologists to act as MycoBank curators, using Citrix software. International Mycological Association 2013-12-17 2013-12 /pmc/articles/PMC3905949/ /pubmed/24563843 http://dx.doi.org/10.5598/imafungus.2013.04.02.16 Text en © 2013 International Mycological Association http://creativecommons.org/licenses/by-nc-nd/3.0/legalcode You are free to share - to copy, distribute and transmit the work, under the following conditions: Attribution: You must attribute the work in the manner specified by the author or licensor (but not in any way that suggests that they endorse you or your use of the work). Non-commercial: You may not use this work for commercial purposes. No derivative works: You may not alter, transform, or build upon this work. For any reuse or distribution, you must make clear to others the license terms of this work, which can be found at http://creativecommons.org/licenses/by-nc-nd/3.0/legalcode. Any of the above conditions can be waived if you get permission from the copyright holder. Nothing in this license impairs or restricts the author’s moral rights.
spellingShingle Article
Robert, Vincent
Vu, Duong
Amor, Ammar Ben Hadj
van de Wiele, Nathalie
Brouwer, Carlo
Jabas, Bernard
Szoke, Szaniszlo
Dridi, Ahmed
Triki, Maher
ben Daoud, Samy
Chouchen, Oussema
Vaas, Lea
de Cock, Arthur
Stalpers, Joost A.
Stalpers, Dora
Verkley, Gerard J.M.
Groenewald, Marizeth
dos Santos, Felipe Borges
Stegehuis, Gerrit
Li, Wei
Wu, Linhuan
Zhang, Run
Ma, Juncai
Zhou, Miaomiao
Gorjón, Sergio Pérez
Eurwilaichitr, Lily
Ingsriswang, Supawadee
Hansen, Karen
Schoch, Conrad
Robbertse, Barbara
Irinyi, Laszlo
Meyer, Wieland
Cardinali, Gianluigi
Hawksworth, David L.
Taylor, John W.
Crous, Pedro W.
MycoBank gearing up for new horizons
title MycoBank gearing up for new horizons
title_full MycoBank gearing up for new horizons
title_fullStr MycoBank gearing up for new horizons
title_full_unstemmed MycoBank gearing up for new horizons
title_short MycoBank gearing up for new horizons
title_sort mycobank gearing up for new horizons
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3905949/
https://www.ncbi.nlm.nih.gov/pubmed/24563843
http://dx.doi.org/10.5598/imafungus.2013.04.02.16
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