Cargando…
Genome sequence of the Litoreibacter arenae type strain (DSM 19593(T)), a member of the Roseobacter clade isolated from sea sand
Litoreibacter arenae Kim et al. 2012 is a member of the genomically well-characterized Rhodobacteraceae clade within the Roseobacter clade. Representatives of this clade are known to be metabolically versatile and involved in marine carbon-producing and biogeochemical processes. They form a physiolo...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Michigan State University
2013
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3910544/ https://www.ncbi.nlm.nih.gov/pubmed/24501650 http://dx.doi.org/10.4056/sigs.4258318 |
_version_ | 1782301984972341248 |
---|---|
author | Riedel, Thomas Fiebig, Anne Petersen, Jörn Gronow, Sabine Kyrpides, Nikos C. Göker, Markus Klenk, Hans-Peter |
author_facet | Riedel, Thomas Fiebig, Anne Petersen, Jörn Gronow, Sabine Kyrpides, Nikos C. Göker, Markus Klenk, Hans-Peter |
author_sort | Riedel, Thomas |
collection | PubMed |
description | Litoreibacter arenae Kim et al. 2012 is a member of the genomically well-characterized Rhodobacteraceae clade within the Roseobacter clade. Representatives of this clade are known to be metabolically versatile and involved in marine carbon-producing and biogeochemical processes. They form a physiologically heterogeneous group of Alphaproteobacteria and were mostly found in coastal or polar waters, especially in symbiosis with algae, in microbial mats, in sediments or together with invertebrates and vertebrates. Here we describe the features of L. arenae DSM 19593(T), including novel aspects of its phenotype, together with the draft genome sequence and annotation. The 3,690,113 bp long genome consists of 17 scaffolds with 3,601 protein-coding and 56 RNA genes. This genome was sequenced as part of the activities of the Transregional Collaborative Research Centre 51 funded by the German Research Foundation (DFG). |
format | Online Article Text |
id | pubmed-3910544 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Michigan State University |
record_format | MEDLINE/PubMed |
spelling | pubmed-39105442014-02-05 Genome sequence of the Litoreibacter arenae type strain (DSM 19593(T)), a member of the Roseobacter clade isolated from sea sand Riedel, Thomas Fiebig, Anne Petersen, Jörn Gronow, Sabine Kyrpides, Nikos C. Göker, Markus Klenk, Hans-Peter Stand Genomic Sci Short Genome Reports Litoreibacter arenae Kim et al. 2012 is a member of the genomically well-characterized Rhodobacteraceae clade within the Roseobacter clade. Representatives of this clade are known to be metabolically versatile and involved in marine carbon-producing and biogeochemical processes. They form a physiologically heterogeneous group of Alphaproteobacteria and were mostly found in coastal or polar waters, especially in symbiosis with algae, in microbial mats, in sediments or together with invertebrates and vertebrates. Here we describe the features of L. arenae DSM 19593(T), including novel aspects of its phenotype, together with the draft genome sequence and annotation. The 3,690,113 bp long genome consists of 17 scaffolds with 3,601 protein-coding and 56 RNA genes. This genome was sequenced as part of the activities of the Transregional Collaborative Research Centre 51 funded by the German Research Foundation (DFG). Michigan State University 2013-10-01 /pmc/articles/PMC3910544/ /pubmed/24501650 http://dx.doi.org/10.4056/sigs.4258318 Text en Copyright © retained by original authors http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Short Genome Reports Riedel, Thomas Fiebig, Anne Petersen, Jörn Gronow, Sabine Kyrpides, Nikos C. Göker, Markus Klenk, Hans-Peter Genome sequence of the Litoreibacter arenae type strain (DSM 19593(T)), a member of the Roseobacter clade isolated from sea sand |
title | Genome sequence of the Litoreibacter arenae type strain (DSM 19593(T)), a member of the Roseobacter clade isolated from sea sand |
title_full | Genome sequence of the Litoreibacter arenae type strain (DSM 19593(T)), a member of the Roseobacter clade isolated from sea sand |
title_fullStr | Genome sequence of the Litoreibacter arenae type strain (DSM 19593(T)), a member of the Roseobacter clade isolated from sea sand |
title_full_unstemmed | Genome sequence of the Litoreibacter arenae type strain (DSM 19593(T)), a member of the Roseobacter clade isolated from sea sand |
title_short | Genome sequence of the Litoreibacter arenae type strain (DSM 19593(T)), a member of the Roseobacter clade isolated from sea sand |
title_sort | genome sequence of the litoreibacter arenae type strain (dsm 19593(t)), a member of the roseobacter clade isolated from sea sand |
topic | Short Genome Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3910544/ https://www.ncbi.nlm.nih.gov/pubmed/24501650 http://dx.doi.org/10.4056/sigs.4258318 |
work_keys_str_mv | AT riedelthomas genomesequenceofthelitoreibacterarenaetypestraindsm19593tamemberoftheroseobactercladeisolatedfromseasand AT fiebiganne genomesequenceofthelitoreibacterarenaetypestraindsm19593tamemberoftheroseobactercladeisolatedfromseasand AT petersenjorn genomesequenceofthelitoreibacterarenaetypestraindsm19593tamemberoftheroseobactercladeisolatedfromseasand AT gronowsabine genomesequenceofthelitoreibacterarenaetypestraindsm19593tamemberoftheroseobactercladeisolatedfromseasand AT kyrpidesnikosc genomesequenceofthelitoreibacterarenaetypestraindsm19593tamemberoftheroseobactercladeisolatedfromseasand AT gokermarkus genomesequenceofthelitoreibacterarenaetypestraindsm19593tamemberoftheroseobactercladeisolatedfromseasand AT klenkhanspeter genomesequenceofthelitoreibacterarenaetypestraindsm19593tamemberoftheroseobactercladeisolatedfromseasand |