Cargando…

Genome sequence of Frateuria aurantia type strain (Kondô 67(T)), a xanthomonade isolated from Lilium auratium Lindl.

Frateuria aurantia (ex Kondô and Ameyama 1958) Swings et al. 1980 is a member of the bispecific genus Frateuria in the family Xanthomonadaceae, which is already heavily targeted for non-type strain genome sequencing. Strain Kondô 67(T) was initially (1958) identified as a member of ‘Acetobacter aura...

Descripción completa

Detalles Bibliográficos
Autores principales: Anderson, Iain, Teshima, Huzuki, Nolan, Matt, Lapidus, Alla, Tice, Hope, Del Rio, Tijana Glavina, Cheng, Jan-Fang, Han, Cliff, Tapia, Roxanne, Goodwin, Lynne A., Pitluck, Sam, Liolios, Konstantinos, Mavromatis, Konstantinos, Pagani, Ioanna, Ivanova, Natalia, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Rohde, Manfred, Lang, Elke, Detter, John C., Göker, Markus, Woyke, Tanja, Bristow, James, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip, Kyrpides, Nikos C., Klenk, Hans-Peter
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Michigan State University 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3910546/
https://www.ncbi.nlm.nih.gov/pubmed/24501647
http://dx.doi.org/10.4056/sigs.4338002
_version_ 1782301985422180352
author Anderson, Iain
Teshima, Huzuki
Nolan, Matt
Lapidus, Alla
Tice, Hope
Del Rio, Tijana Glavina
Cheng, Jan-Fang
Han, Cliff
Tapia, Roxanne
Goodwin, Lynne A.
Pitluck, Sam
Liolios, Konstantinos
Mavromatis, Konstantinos
Pagani, Ioanna
Ivanova, Natalia
Mikhailova, Natalia
Pati, Amrita
Chen, Amy
Palaniappan, Krishna
Land, Miriam
Rohde, Manfred
Lang, Elke
Detter, John C.
Göker, Markus
Woyke, Tanja
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Kyrpides, Nikos C.
Klenk, Hans-Peter
author_facet Anderson, Iain
Teshima, Huzuki
Nolan, Matt
Lapidus, Alla
Tice, Hope
Del Rio, Tijana Glavina
Cheng, Jan-Fang
Han, Cliff
Tapia, Roxanne
Goodwin, Lynne A.
Pitluck, Sam
Liolios, Konstantinos
Mavromatis, Konstantinos
Pagani, Ioanna
Ivanova, Natalia
Mikhailova, Natalia
Pati, Amrita
Chen, Amy
Palaniappan, Krishna
Land, Miriam
Rohde, Manfred
Lang, Elke
Detter, John C.
Göker, Markus
Woyke, Tanja
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Kyrpides, Nikos C.
Klenk, Hans-Peter
author_sort Anderson, Iain
collection PubMed
description Frateuria aurantia (ex Kondô and Ameyama 1958) Swings et al. 1980 is a member of the bispecific genus Frateuria in the family Xanthomonadaceae, which is already heavily targeted for non-type strain genome sequencing. Strain Kondô 67(T) was initially (1958) identified as a member of ‘Acetobacter aurantius’, a name that was not considered for the approved list. Kondô 67(T) was therefore later designated as the type strain of the newly proposed acetogenic species Frateuria aurantia. The strain is of interest because of its triterpenoids (hopane family). F. aurantia Kondô 67(T) is the first member of the genus Frateura whose genome sequence has been deciphered, and here we describe the features of this organism, together with the complete genome sequence and annotation. The 3,603,458-bp long chromosome with its 3,200 protein-coding and 88 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
format Online
Article
Text
id pubmed-3910546
institution National Center for Biotechnology Information
language English
publishDate 2013
publisher Michigan State University
record_format MEDLINE/PubMed
spelling pubmed-39105462014-02-05 Genome sequence of Frateuria aurantia type strain (Kondô 67(T)), a xanthomonade isolated from Lilium auratium Lindl. Anderson, Iain Teshima, Huzuki Nolan, Matt Lapidus, Alla Tice, Hope Del Rio, Tijana Glavina Cheng, Jan-Fang Han, Cliff Tapia, Roxanne Goodwin, Lynne A. Pitluck, Sam Liolios, Konstantinos Mavromatis, Konstantinos Pagani, Ioanna Ivanova, Natalia Mikhailova, Natalia Pati, Amrita Chen, Amy Palaniappan, Krishna Land, Miriam Rohde, Manfred Lang, Elke Detter, John C. Göker, Markus Woyke, Tanja Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Stand Genomic Sci Short Genome Reports Frateuria aurantia (ex Kondô and Ameyama 1958) Swings et al. 1980 is a member of the bispecific genus Frateuria in the family Xanthomonadaceae, which is already heavily targeted for non-type strain genome sequencing. Strain Kondô 67(T) was initially (1958) identified as a member of ‘Acetobacter aurantius’, a name that was not considered for the approved list. Kondô 67(T) was therefore later designated as the type strain of the newly proposed acetogenic species Frateuria aurantia. The strain is of interest because of its triterpenoids (hopane family). F. aurantia Kondô 67(T) is the first member of the genus Frateura whose genome sequence has been deciphered, and here we describe the features of this organism, together with the complete genome sequence and annotation. The 3,603,458-bp long chromosome with its 3,200 protein-coding and 88 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project. Michigan State University 2013-10-02 /pmc/articles/PMC3910546/ /pubmed/24501647 http://dx.doi.org/10.4056/sigs.4338002 Text en Copyright © retained by original authors http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Genome Reports
Anderson, Iain
Teshima, Huzuki
Nolan, Matt
Lapidus, Alla
Tice, Hope
Del Rio, Tijana Glavina
Cheng, Jan-Fang
Han, Cliff
Tapia, Roxanne
Goodwin, Lynne A.
Pitluck, Sam
Liolios, Konstantinos
Mavromatis, Konstantinos
Pagani, Ioanna
Ivanova, Natalia
Mikhailova, Natalia
Pati, Amrita
Chen, Amy
Palaniappan, Krishna
Land, Miriam
Rohde, Manfred
Lang, Elke
Detter, John C.
Göker, Markus
Woyke, Tanja
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Kyrpides, Nikos C.
Klenk, Hans-Peter
Genome sequence of Frateuria aurantia type strain (Kondô 67(T)), a xanthomonade isolated from Lilium auratium Lindl.
title Genome sequence of Frateuria aurantia type strain (Kondô 67(T)), a xanthomonade isolated from Lilium auratium Lindl.
title_full Genome sequence of Frateuria aurantia type strain (Kondô 67(T)), a xanthomonade isolated from Lilium auratium Lindl.
title_fullStr Genome sequence of Frateuria aurantia type strain (Kondô 67(T)), a xanthomonade isolated from Lilium auratium Lindl.
title_full_unstemmed Genome sequence of Frateuria aurantia type strain (Kondô 67(T)), a xanthomonade isolated from Lilium auratium Lindl.
title_short Genome sequence of Frateuria aurantia type strain (Kondô 67(T)), a xanthomonade isolated from Lilium auratium Lindl.
title_sort genome sequence of frateuria aurantia type strain (kondô 67(t)), a xanthomonade isolated from lilium auratium lindl.
topic Short Genome Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3910546/
https://www.ncbi.nlm.nih.gov/pubmed/24501647
http://dx.doi.org/10.4056/sigs.4338002
work_keys_str_mv AT andersoniain genomesequenceoffrateuriaaurantiatypestrainkondo67taxanthomonadeisolatedfromliliumauratiumlindl
AT teshimahuzuki genomesequenceoffrateuriaaurantiatypestrainkondo67taxanthomonadeisolatedfromliliumauratiumlindl
AT nolanmatt genomesequenceoffrateuriaaurantiatypestrainkondo67taxanthomonadeisolatedfromliliumauratiumlindl
AT lapidusalla genomesequenceoffrateuriaaurantiatypestrainkondo67taxanthomonadeisolatedfromliliumauratiumlindl
AT ticehope genomesequenceoffrateuriaaurantiatypestrainkondo67taxanthomonadeisolatedfromliliumauratiumlindl
AT delriotijanaglavina genomesequenceoffrateuriaaurantiatypestrainkondo67taxanthomonadeisolatedfromliliumauratiumlindl
AT chengjanfang genomesequenceoffrateuriaaurantiatypestrainkondo67taxanthomonadeisolatedfromliliumauratiumlindl
AT hancliff genomesequenceoffrateuriaaurantiatypestrainkondo67taxanthomonadeisolatedfromliliumauratiumlindl
AT tapiaroxanne genomesequenceoffrateuriaaurantiatypestrainkondo67taxanthomonadeisolatedfromliliumauratiumlindl
AT goodwinlynnea genomesequenceoffrateuriaaurantiatypestrainkondo67taxanthomonadeisolatedfromliliumauratiumlindl
AT pitlucksam genomesequenceoffrateuriaaurantiatypestrainkondo67taxanthomonadeisolatedfromliliumauratiumlindl
AT liolioskonstantinos genomesequenceoffrateuriaaurantiatypestrainkondo67taxanthomonadeisolatedfromliliumauratiumlindl
AT mavromatiskonstantinos genomesequenceoffrateuriaaurantiatypestrainkondo67taxanthomonadeisolatedfromliliumauratiumlindl
AT paganiioanna genomesequenceoffrateuriaaurantiatypestrainkondo67taxanthomonadeisolatedfromliliumauratiumlindl
AT ivanovanatalia genomesequenceoffrateuriaaurantiatypestrainkondo67taxanthomonadeisolatedfromliliumauratiumlindl
AT mikhailovanatalia genomesequenceoffrateuriaaurantiatypestrainkondo67taxanthomonadeisolatedfromliliumauratiumlindl
AT patiamrita genomesequenceoffrateuriaaurantiatypestrainkondo67taxanthomonadeisolatedfromliliumauratiumlindl
AT chenamy genomesequenceoffrateuriaaurantiatypestrainkondo67taxanthomonadeisolatedfromliliumauratiumlindl
AT palaniappankrishna genomesequenceoffrateuriaaurantiatypestrainkondo67taxanthomonadeisolatedfromliliumauratiumlindl
AT landmiriam genomesequenceoffrateuriaaurantiatypestrainkondo67taxanthomonadeisolatedfromliliumauratiumlindl
AT rohdemanfred genomesequenceoffrateuriaaurantiatypestrainkondo67taxanthomonadeisolatedfromliliumauratiumlindl
AT langelke genomesequenceoffrateuriaaurantiatypestrainkondo67taxanthomonadeisolatedfromliliumauratiumlindl
AT detterjohnc genomesequenceoffrateuriaaurantiatypestrainkondo67taxanthomonadeisolatedfromliliumauratiumlindl
AT gokermarkus genomesequenceoffrateuriaaurantiatypestrainkondo67taxanthomonadeisolatedfromliliumauratiumlindl
AT woyketanja genomesequenceoffrateuriaaurantiatypestrainkondo67taxanthomonadeisolatedfromliliumauratiumlindl
AT bristowjames genomesequenceoffrateuriaaurantiatypestrainkondo67taxanthomonadeisolatedfromliliumauratiumlindl
AT eisenjonathana genomesequenceoffrateuriaaurantiatypestrainkondo67taxanthomonadeisolatedfromliliumauratiumlindl
AT markowitzvictor genomesequenceoffrateuriaaurantiatypestrainkondo67taxanthomonadeisolatedfromliliumauratiumlindl
AT hugenholtzphilip genomesequenceoffrateuriaaurantiatypestrainkondo67taxanthomonadeisolatedfromliliumauratiumlindl
AT kyrpidesnikosc genomesequenceoffrateuriaaurantiatypestrainkondo67taxanthomonadeisolatedfromliliumauratiumlindl
AT klenkhanspeter genomesequenceoffrateuriaaurantiatypestrainkondo67taxanthomonadeisolatedfromliliumauratiumlindl