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Genome sequence and description of the heavy metal tolerant bacterium Lysinibacillus sphaericus strain OT4b.31
Lysinibacillus sphaericus strain OT4b.31 is a native Colombian strain having no larvicidal activity against Culex quinquefasciatus and is widely applied in the bioremediation of heavy-metal polluted environments. Strain OT4b.31 was placed between DNA homology groups III and IV. By gap-filling and al...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Michigan State University
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3910547/ https://www.ncbi.nlm.nih.gov/pubmed/24501644 http://dx.doi.org/10.4056/sigs.4227894 |
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author | Peña-Montenegro, Tito David Dussán, Jenny |
author_facet | Peña-Montenegro, Tito David Dussán, Jenny |
author_sort | Peña-Montenegro, Tito David |
collection | PubMed |
description | Lysinibacillus sphaericus strain OT4b.31 is a native Colombian strain having no larvicidal activity against Culex quinquefasciatus and is widely applied in the bioremediation of heavy-metal polluted environments. Strain OT4b.31 was placed between DNA homology groups III and IV. By gap-filling and alignment steps, we propose a 4,096,672 bp chromosomal scaffold. The whole genome (consisting of 4,856,302 bp long, 94 contigs and 4,846 predicted protein-coding sequences) revealed differences in comparison to the L. sphaericus C3-41 genome, such as syntenial relationships, prophages and putative mosquitocidal toxins. Sphaericolysin B354, the coleopteran toxin Sip1A and heavy metal resistance clusters from nik, ars, czc, cop, chr, czr and cad operons were identified. Lysinibacillus sphaericus OT4b.31 has applications not only in bioremediation efforts, but also in the biological control of agricultural pests. |
format | Online Article Text |
id | pubmed-3910547 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Michigan State University |
record_format | MEDLINE/PubMed |
spelling | pubmed-39105472014-02-05 Genome sequence and description of the heavy metal tolerant bacterium Lysinibacillus sphaericus strain OT4b.31 Peña-Montenegro, Tito David Dussán, Jenny Stand Genomic Sci Short Genome Reports Lysinibacillus sphaericus strain OT4b.31 is a native Colombian strain having no larvicidal activity against Culex quinquefasciatus and is widely applied in the bioremediation of heavy-metal polluted environments. Strain OT4b.31 was placed between DNA homology groups III and IV. By gap-filling and alignment steps, we propose a 4,096,672 bp chromosomal scaffold. The whole genome (consisting of 4,856,302 bp long, 94 contigs and 4,846 predicted protein-coding sequences) revealed differences in comparison to the L. sphaericus C3-41 genome, such as syntenial relationships, prophages and putative mosquitocidal toxins. Sphaericolysin B354, the coleopteran toxin Sip1A and heavy metal resistance clusters from nik, ars, czc, cop, chr, czr and cad operons were identified. Lysinibacillus sphaericus OT4b.31 has applications not only in bioremediation efforts, but also in the biological control of agricultural pests. Michigan State University 2013-10-02 /pmc/articles/PMC3910547/ /pubmed/24501644 http://dx.doi.org/10.4056/sigs.4227894 Text en Copyright © retained by original authors http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Short Genome Reports Peña-Montenegro, Tito David Dussán, Jenny Genome sequence and description of the heavy metal tolerant bacterium Lysinibacillus sphaericus strain OT4b.31 |
title | Genome sequence and description of the heavy metal tolerant bacterium Lysinibacillus sphaericus strain OT4b.31 |
title_full | Genome sequence and description of the heavy metal tolerant bacterium Lysinibacillus sphaericus strain OT4b.31 |
title_fullStr | Genome sequence and description of the heavy metal tolerant bacterium Lysinibacillus sphaericus strain OT4b.31 |
title_full_unstemmed | Genome sequence and description of the heavy metal tolerant bacterium Lysinibacillus sphaericus strain OT4b.31 |
title_short | Genome sequence and description of the heavy metal tolerant bacterium Lysinibacillus sphaericus strain OT4b.31 |
title_sort | genome sequence and description of the heavy metal tolerant bacterium lysinibacillus sphaericus strain ot4b.31 |
topic | Short Genome Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3910547/ https://www.ncbi.nlm.nih.gov/pubmed/24501644 http://dx.doi.org/10.4056/sigs.4227894 |
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