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Complete genome sequence of Granulicella mallensis type strain MP5ACTX8(T), an acidobacterium from tundra soil

Granulicella mallensis MP5ACTX8(T) is a novel species of the genus Granulicella in subdivision 1of Acidobacteria. G. mallensis is of ecological interest being a member of the dominant soil bacterial community active at low temperatures and nutrient limiting conditions in Arctic alpine tundra. G. mal...

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Autores principales: Rawat, Suman R., Männistö, Minna K., Starovoytov, Valentin, Goodwin, Lynne, Nolan, Matt, Hauser, Loren J., Land, Miriam, Davenport, Karen Walston, Woyke, Tanja, Häggblom, Max M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Michigan State University 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3910553/
https://www.ncbi.nlm.nih.gov/pubmed/24501646
http://dx.doi.org/10.4056/sigs.4328031
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author Rawat, Suman R.
Männistö, Minna K.
Starovoytov, Valentin
Goodwin, Lynne
Nolan, Matt
Hauser, Loren J.
Land, Miriam
Davenport, Karen Walston
Woyke, Tanja
Häggblom, Max M.
author_facet Rawat, Suman R.
Männistö, Minna K.
Starovoytov, Valentin
Goodwin, Lynne
Nolan, Matt
Hauser, Loren J.
Land, Miriam
Davenport, Karen Walston
Woyke, Tanja
Häggblom, Max M.
author_sort Rawat, Suman R.
collection PubMed
description Granulicella mallensis MP5ACTX8(T) is a novel species of the genus Granulicella in subdivision 1of Acidobacteria. G. mallensis is of ecological interest being a member of the dominant soil bacterial community active at low temperatures and nutrient limiting conditions in Arctic alpine tundra. G. mallensis is a cold-adapted acidophile and a versatile heterotroph that hydrolyzes a suite of sugars and complex polysaccharides. Genome analysis revealed metabolic versatility with genes involved in metabolism and transport of carbohydrates. These include gene modules encoding the carbohydrate-active enzyme (CAZyme) family involved in breakdown, utilization and biosynthesis of diverse structural and storage polysaccharides including plant based carbon polymers. The genome of Granulicella mallensis MP5ACTX8(T) consists of a single replicon of 6,237,577 base pairs (bp) with 4,907 protein-coding genes and 53 RNA genes.
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spelling pubmed-39105532014-02-05 Complete genome sequence of Granulicella mallensis type strain MP5ACTX8(T), an acidobacterium from tundra soil Rawat, Suman R. Männistö, Minna K. Starovoytov, Valentin Goodwin, Lynne Nolan, Matt Hauser, Loren J. Land, Miriam Davenport, Karen Walston Woyke, Tanja Häggblom, Max M. Stand Genomic Sci Short Genome Reports Granulicella mallensis MP5ACTX8(T) is a novel species of the genus Granulicella in subdivision 1of Acidobacteria. G. mallensis is of ecological interest being a member of the dominant soil bacterial community active at low temperatures and nutrient limiting conditions in Arctic alpine tundra. G. mallensis is a cold-adapted acidophile and a versatile heterotroph that hydrolyzes a suite of sugars and complex polysaccharides. Genome analysis revealed metabolic versatility with genes involved in metabolism and transport of carbohydrates. These include gene modules encoding the carbohydrate-active enzyme (CAZyme) family involved in breakdown, utilization and biosynthesis of diverse structural and storage polysaccharides including plant based carbon polymers. The genome of Granulicella mallensis MP5ACTX8(T) consists of a single replicon of 6,237,577 base pairs (bp) with 4,907 protein-coding genes and 53 RNA genes. Michigan State University 2013-09-30 /pmc/articles/PMC3910553/ /pubmed/24501646 http://dx.doi.org/10.4056/sigs.4328031 Text en Copyright © retained by original authors http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Genome Reports
Rawat, Suman R.
Männistö, Minna K.
Starovoytov, Valentin
Goodwin, Lynne
Nolan, Matt
Hauser, Loren J.
Land, Miriam
Davenport, Karen Walston
Woyke, Tanja
Häggblom, Max M.
Complete genome sequence of Granulicella mallensis type strain MP5ACTX8(T), an acidobacterium from tundra soil
title Complete genome sequence of Granulicella mallensis type strain MP5ACTX8(T), an acidobacterium from tundra soil
title_full Complete genome sequence of Granulicella mallensis type strain MP5ACTX8(T), an acidobacterium from tundra soil
title_fullStr Complete genome sequence of Granulicella mallensis type strain MP5ACTX8(T), an acidobacterium from tundra soil
title_full_unstemmed Complete genome sequence of Granulicella mallensis type strain MP5ACTX8(T), an acidobacterium from tundra soil
title_short Complete genome sequence of Granulicella mallensis type strain MP5ACTX8(T), an acidobacterium from tundra soil
title_sort complete genome sequence of granulicella mallensis type strain mp5actx8(t), an acidobacterium from tundra soil
topic Short Genome Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3910553/
https://www.ncbi.nlm.nih.gov/pubmed/24501646
http://dx.doi.org/10.4056/sigs.4328031
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