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Complete genome sequence of Granulicella mallensis type strain MP5ACTX8(T), an acidobacterium from tundra soil
Granulicella mallensis MP5ACTX8(T) is a novel species of the genus Granulicella in subdivision 1of Acidobacteria. G. mallensis is of ecological interest being a member of the dominant soil bacterial community active at low temperatures and nutrient limiting conditions in Arctic alpine tundra. G. mal...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Michigan State University
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3910553/ https://www.ncbi.nlm.nih.gov/pubmed/24501646 http://dx.doi.org/10.4056/sigs.4328031 |
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author | Rawat, Suman R. Männistö, Minna K. Starovoytov, Valentin Goodwin, Lynne Nolan, Matt Hauser, Loren J. Land, Miriam Davenport, Karen Walston Woyke, Tanja Häggblom, Max M. |
author_facet | Rawat, Suman R. Männistö, Minna K. Starovoytov, Valentin Goodwin, Lynne Nolan, Matt Hauser, Loren J. Land, Miriam Davenport, Karen Walston Woyke, Tanja Häggblom, Max M. |
author_sort | Rawat, Suman R. |
collection | PubMed |
description | Granulicella mallensis MP5ACTX8(T) is a novel species of the genus Granulicella in subdivision 1of Acidobacteria. G. mallensis is of ecological interest being a member of the dominant soil bacterial community active at low temperatures and nutrient limiting conditions in Arctic alpine tundra. G. mallensis is a cold-adapted acidophile and a versatile heterotroph that hydrolyzes a suite of sugars and complex polysaccharides. Genome analysis revealed metabolic versatility with genes involved in metabolism and transport of carbohydrates. These include gene modules encoding the carbohydrate-active enzyme (CAZyme) family involved in breakdown, utilization and biosynthesis of diverse structural and storage polysaccharides including plant based carbon polymers. The genome of Granulicella mallensis MP5ACTX8(T) consists of a single replicon of 6,237,577 base pairs (bp) with 4,907 protein-coding genes and 53 RNA genes. |
format | Online Article Text |
id | pubmed-3910553 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Michigan State University |
record_format | MEDLINE/PubMed |
spelling | pubmed-39105532014-02-05 Complete genome sequence of Granulicella mallensis type strain MP5ACTX8(T), an acidobacterium from tundra soil Rawat, Suman R. Männistö, Minna K. Starovoytov, Valentin Goodwin, Lynne Nolan, Matt Hauser, Loren J. Land, Miriam Davenport, Karen Walston Woyke, Tanja Häggblom, Max M. Stand Genomic Sci Short Genome Reports Granulicella mallensis MP5ACTX8(T) is a novel species of the genus Granulicella in subdivision 1of Acidobacteria. G. mallensis is of ecological interest being a member of the dominant soil bacterial community active at low temperatures and nutrient limiting conditions in Arctic alpine tundra. G. mallensis is a cold-adapted acidophile and a versatile heterotroph that hydrolyzes a suite of sugars and complex polysaccharides. Genome analysis revealed metabolic versatility with genes involved in metabolism and transport of carbohydrates. These include gene modules encoding the carbohydrate-active enzyme (CAZyme) family involved in breakdown, utilization and biosynthesis of diverse structural and storage polysaccharides including plant based carbon polymers. The genome of Granulicella mallensis MP5ACTX8(T) consists of a single replicon of 6,237,577 base pairs (bp) with 4,907 protein-coding genes and 53 RNA genes. Michigan State University 2013-09-30 /pmc/articles/PMC3910553/ /pubmed/24501646 http://dx.doi.org/10.4056/sigs.4328031 Text en Copyright © retained by original authors http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Short Genome Reports Rawat, Suman R. Männistö, Minna K. Starovoytov, Valentin Goodwin, Lynne Nolan, Matt Hauser, Loren J. Land, Miriam Davenport, Karen Walston Woyke, Tanja Häggblom, Max M. Complete genome sequence of Granulicella mallensis type strain MP5ACTX8(T), an acidobacterium from tundra soil |
title | Complete genome sequence of Granulicella mallensis type strain MP5ACTX8(T), an acidobacterium from tundra soil |
title_full | Complete genome sequence of Granulicella mallensis type strain MP5ACTX8(T), an acidobacterium from tundra soil |
title_fullStr | Complete genome sequence of Granulicella mallensis type strain MP5ACTX8(T), an acidobacterium from tundra soil |
title_full_unstemmed | Complete genome sequence of Granulicella mallensis type strain MP5ACTX8(T), an acidobacterium from tundra soil |
title_short | Complete genome sequence of Granulicella mallensis type strain MP5ACTX8(T), an acidobacterium from tundra soil |
title_sort | complete genome sequence of granulicella mallensis type strain mp5actx8(t), an acidobacterium from tundra soil |
topic | Short Genome Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3910553/ https://www.ncbi.nlm.nih.gov/pubmed/24501646 http://dx.doi.org/10.4056/sigs.4328031 |
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