Non-contiguous finished genome sequence of plant-growth promoting Serratia proteamaculans S4

Serratia proteamaculans S4 (previously Serratia sp. S4), isolated from the rhizosphere of wild Equisetum sp., has the ability to stimulate plant growth and to suppress the growth of several soil-borne fungal pathogens of economically important crops. Here we present the non-contiguous, finished geno...

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Autores principales: Neupane, Saraswoti, Goodwin, Lynne A., Högberg, Nils, Kyrpides, Nikos C., Alström, Sadhna, Bruce, David, Quintana, Beverly, Munk, Christine, Daligault, Hajnalka, Teshima, Hazuki, Davenport, Karen, Reitenga, Krista, Green, Lance, Chain, Patrick, Erkkila, Tracy, Gu, Wei, Zhang, Xiaojing, Xu, Yan, Kunde, Yulia, Chertkov, Olga, Han, James, Han, Cliff, Detter, John C., Ivanova, Natalia, Pati, Amrita, Chen, Amy, Szeto, Ernest, Mavromatis, Kostas, Huntemann, Marcel, Nolan, Matt, Pitluck, Sam, Deshpande, Shweta, Markowitz, Victor, Pagani, Ioanna, Klenk, Hans-Peter, Woyke, Tanja, Finlay, Roger D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Michigan State University 2013
Materias:
Short Genome Reports
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3910699/
https://www.ncbi.nlm.nih.gov/pubmed/24501629
http://dx.doi.org/10.4056/sigs.4027757
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author Neupane, Saraswoti
Goodwin, Lynne A.
Högberg, Nils
Kyrpides, Nikos C.
Alström, Sadhna
Bruce, David
Quintana, Beverly
Munk, Christine
Daligault, Hajnalka
Teshima, Hazuki
Davenport, Karen
Reitenga, Krista
Green, Lance
Chain, Patrick
Erkkila, Tracy
Gu, Wei
Zhang, Xiaojing
Xu, Yan
Kunde, Yulia
Chertkov, Olga
Han, James
Han, Cliff
Detter, John C.
Ivanova, Natalia
Pati, Amrita
Chen, Amy
Szeto, Ernest
Mavromatis, Kostas
Huntemann, Marcel
Nolan, Matt
Pitluck, Sam
Deshpande, Shweta
Markowitz, Victor
Pagani, Ioanna
Klenk, Hans-Peter
Woyke, Tanja
Finlay, Roger D.
author_facet Neupane, Saraswoti
Goodwin, Lynne A.
Högberg, Nils
Kyrpides, Nikos C.
Alström, Sadhna
Bruce, David
Quintana, Beverly
Munk, Christine
Daligault, Hajnalka
Teshima, Hazuki
Davenport, Karen
Reitenga, Krista
Green, Lance
Chain, Patrick
Erkkila, Tracy
Gu, Wei
Zhang, Xiaojing
Xu, Yan
Kunde, Yulia
Chertkov, Olga
Han, James
Han, Cliff
Detter, John C.
Ivanova, Natalia
Pati, Amrita
Chen, Amy
Szeto, Ernest
Mavromatis, Kostas
Huntemann, Marcel
Nolan, Matt
Pitluck, Sam
Deshpande, Shweta
Markowitz, Victor
Pagani, Ioanna
Klenk, Hans-Peter
Woyke, Tanja
Finlay, Roger D.
author_sort Neupane, Saraswoti
collection PubMed
description Serratia proteamaculans S4 (previously Serratia sp. S4), isolated from the rhizosphere of wild Equisetum sp., has the ability to stimulate plant growth and to suppress the growth of several soil-borne fungal pathogens of economically important crops. Here we present the non-contiguous, finished genome sequence of S. proteamaculans S4, which consists of a 5,324,944 bp circular chromosome and a 129,797 bp circular plasmid. The chromosome contains 5,008 predicted genes while the plasmid comprises 134 predicted genes. In total, 4,993 genes are assigned as protein-coding genes. The genome consists of 22 rRNA genes, 82 tRNA genes and 58 pseudogenes. This genome is a part of the project “Genomics of four rapeseed plant growth-promoting bacteria with antagonistic effect on plant pathogens” awarded through the 2010 DOE-JGI’s Community Sequencing Program.
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spelling pubmed-39106992014-02-05 Non-contiguous finished genome sequence of plant-growth promoting Serratia proteamaculans S4 Neupane, Saraswoti Goodwin, Lynne A. Högberg, Nils Kyrpides, Nikos C. Alström, Sadhna Bruce, David Quintana, Beverly Munk, Christine Daligault, Hajnalka Teshima, Hazuki Davenport, Karen Reitenga, Krista Green, Lance Chain, Patrick Erkkila, Tracy Gu, Wei Zhang, Xiaojing Xu, Yan Kunde, Yulia Chertkov, Olga Han, James Han, Cliff Detter, John C. Ivanova, Natalia Pati, Amrita Chen, Amy Szeto, Ernest Mavromatis, Kostas Huntemann, Marcel Nolan, Matt Pitluck, Sam Deshpande, Shweta Markowitz, Victor Pagani, Ioanna Klenk, Hans-Peter Woyke, Tanja Finlay, Roger D. Stand Genomic Sci Short Genome Reports Serratia proteamaculans S4 (previously Serratia sp. S4), isolated from the rhizosphere of wild Equisetum sp., has the ability to stimulate plant growth and to suppress the growth of several soil-borne fungal pathogens of economically important crops. Here we present the non-contiguous, finished genome sequence of S. proteamaculans S4, which consists of a 5,324,944 bp circular chromosome and a 129,797 bp circular plasmid. The chromosome contains 5,008 predicted genes while the plasmid comprises 134 predicted genes. In total, 4,993 genes are assigned as protein-coding genes. The genome consists of 22 rRNA genes, 82 tRNA genes and 58 pseudogenes. This genome is a part of the project “Genomics of four rapeseed plant growth-promoting bacteria with antagonistic effect on plant pathogens” awarded through the 2010 DOE-JGI’s Community Sequencing Program. Michigan State University 2013-07-30 /pmc/articles/PMC3910699/ /pubmed/24501629 http://dx.doi.org/10.4056/sigs.4027757 Text en Copyright © retained by original authors http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Genome Reports
Neupane, Saraswoti
Goodwin, Lynne A.
Högberg, Nils
Kyrpides, Nikos C.
Alström, Sadhna
Bruce, David
Quintana, Beverly
Munk, Christine
Daligault, Hajnalka
Teshima, Hazuki
Davenport, Karen
Reitenga, Krista
Green, Lance
Chain, Patrick
Erkkila, Tracy
Gu, Wei
Zhang, Xiaojing
Xu, Yan
Kunde, Yulia
Chertkov, Olga
Han, James
Han, Cliff
Detter, John C.
Ivanova, Natalia
Pati, Amrita
Chen, Amy
Szeto, Ernest
Mavromatis, Kostas
Huntemann, Marcel
Nolan, Matt
Pitluck, Sam
Deshpande, Shweta
Markowitz, Victor
Pagani, Ioanna
Klenk, Hans-Peter
Woyke, Tanja
Finlay, Roger D.
Non-contiguous finished genome sequence of plant-growth promoting Serratia proteamaculans S4
title Non-contiguous finished genome sequence of plant-growth promoting Serratia proteamaculans S4
title_full Non-contiguous finished genome sequence of plant-growth promoting Serratia proteamaculans S4
title_fullStr Non-contiguous finished genome sequence of plant-growth promoting Serratia proteamaculans S4
title_full_unstemmed Non-contiguous finished genome sequence of plant-growth promoting Serratia proteamaculans S4
title_short Non-contiguous finished genome sequence of plant-growth promoting Serratia proteamaculans S4
title_sort non-contiguous finished genome sequence of plant-growth promoting serratia proteamaculans s4
topic Short Genome Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3910699/
https://www.ncbi.nlm.nih.gov/pubmed/24501629
http://dx.doi.org/10.4056/sigs.4027757
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