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Complete genome sequence of Dehalobacter restrictus PER-K23(T)
Dehalobacter restrictus strain PER-K23 (DSM 9455) is the type strain of the species Dehalobacter restrictus. D. restrictus strain PER-K23 grows by organohalide respiration, coupling the oxidation of H(2) to the reductive dechlorination of tetra- or trichloroethene. Growth has not been observed with...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Michigan State University
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3910700/ https://www.ncbi.nlm.nih.gov/pubmed/24501624 http://dx.doi.org/10.4056/sigs.3787426 |
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author | Kruse, Thomas Maillard, Julien Goodwin, Lynne Woyke, Tanja Teshima, Hazuki Bruce, David Detter, Chris Tapia, Roxanne Han, Cliff Huntemann, Marcel Wei, Chia-Lin Han, James Chen, Amy Kyrpides, Nikos Szeto, Ernest Markowitz, Victor Ivanova, Natalia Pagani, Ioanna Pati, Amrita Pitluck, Sam Nolan, Matt Holliger, Christof Smidt, Hauke |
author_facet | Kruse, Thomas Maillard, Julien Goodwin, Lynne Woyke, Tanja Teshima, Hazuki Bruce, David Detter, Chris Tapia, Roxanne Han, Cliff Huntemann, Marcel Wei, Chia-Lin Han, James Chen, Amy Kyrpides, Nikos Szeto, Ernest Markowitz, Victor Ivanova, Natalia Pagani, Ioanna Pati, Amrita Pitluck, Sam Nolan, Matt Holliger, Christof Smidt, Hauke |
author_sort | Kruse, Thomas |
collection | PubMed |
description | Dehalobacter restrictus strain PER-K23 (DSM 9455) is the type strain of the species Dehalobacter restrictus. D. restrictus strain PER-K23 grows by organohalide respiration, coupling the oxidation of H(2) to the reductive dechlorination of tetra- or trichloroethene. Growth has not been observed with any other electron donor or acceptor, nor has fermentative growth been shown. Here we introduce the first full genome of a pure culture within the genus Dehalobacter. The 2,943,336 bp long genome contains 2,826 protein coding and 82 RNA genes, including 5 16S rRNA genes. Interestingly, the genome contains 25 predicted reductive dehalogenase genes, the majority of which appear to be full length. The reductive dehalogenase genes are mainly located in two clusters, suggesting a much larger potential for organohalide respiration than previously anticipated. |
format | Online Article Text |
id | pubmed-3910700 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Michigan State University |
record_format | MEDLINE/PubMed |
spelling | pubmed-39107002014-02-05 Complete genome sequence of Dehalobacter restrictus PER-K23(T) Kruse, Thomas Maillard, Julien Goodwin, Lynne Woyke, Tanja Teshima, Hazuki Bruce, David Detter, Chris Tapia, Roxanne Han, Cliff Huntemann, Marcel Wei, Chia-Lin Han, James Chen, Amy Kyrpides, Nikos Szeto, Ernest Markowitz, Victor Ivanova, Natalia Pagani, Ioanna Pati, Amrita Pitluck, Sam Nolan, Matt Holliger, Christof Smidt, Hauke Stand Genomic Sci Short Genome Reports Dehalobacter restrictus strain PER-K23 (DSM 9455) is the type strain of the species Dehalobacter restrictus. D. restrictus strain PER-K23 grows by organohalide respiration, coupling the oxidation of H(2) to the reductive dechlorination of tetra- or trichloroethene. Growth has not been observed with any other electron donor or acceptor, nor has fermentative growth been shown. Here we introduce the first full genome of a pure culture within the genus Dehalobacter. The 2,943,336 bp long genome contains 2,826 protein coding and 82 RNA genes, including 5 16S rRNA genes. Interestingly, the genome contains 25 predicted reductive dehalogenase genes, the majority of which appear to be full length. The reductive dehalogenase genes are mainly located in two clusters, suggesting a much larger potential for organohalide respiration than previously anticipated. Michigan State University 2013-07-30 /pmc/articles/PMC3910700/ /pubmed/24501624 http://dx.doi.org/10.4056/sigs.3787426 Text en Copyright © retained by original authors http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Short Genome Reports Kruse, Thomas Maillard, Julien Goodwin, Lynne Woyke, Tanja Teshima, Hazuki Bruce, David Detter, Chris Tapia, Roxanne Han, Cliff Huntemann, Marcel Wei, Chia-Lin Han, James Chen, Amy Kyrpides, Nikos Szeto, Ernest Markowitz, Victor Ivanova, Natalia Pagani, Ioanna Pati, Amrita Pitluck, Sam Nolan, Matt Holliger, Christof Smidt, Hauke Complete genome sequence of Dehalobacter restrictus PER-K23(T) |
title | Complete genome sequence of Dehalobacter restrictus PER-K23(T) |
title_full | Complete genome sequence of Dehalobacter restrictus PER-K23(T) |
title_fullStr | Complete genome sequence of Dehalobacter restrictus PER-K23(T) |
title_full_unstemmed | Complete genome sequence of Dehalobacter restrictus PER-K23(T) |
title_short | Complete genome sequence of Dehalobacter restrictus PER-K23(T) |
title_sort | complete genome sequence of dehalobacter restrictus per-k23(t) |
topic | Short Genome Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3910700/ https://www.ncbi.nlm.nih.gov/pubmed/24501624 http://dx.doi.org/10.4056/sigs.3787426 |
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