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Complete genome sequence of Dehalobacter restrictus PER-K23(T)

Dehalobacter restrictus strain PER-K23 (DSM 9455) is the type strain of the species Dehalobacter restrictus. D. restrictus strain PER-K23 grows by organohalide respiration, coupling the oxidation of H(2) to the reductive dechlorination of tetra- or trichloroethene. Growth has not been observed with...

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Autores principales: Kruse, Thomas, Maillard, Julien, Goodwin, Lynne, Woyke, Tanja, Teshima, Hazuki, Bruce, David, Detter, Chris, Tapia, Roxanne, Han, Cliff, Huntemann, Marcel, Wei, Chia-Lin, Han, James, Chen, Amy, Kyrpides, Nikos, Szeto, Ernest, Markowitz, Victor, Ivanova, Natalia, Pagani, Ioanna, Pati, Amrita, Pitluck, Sam, Nolan, Matt, Holliger, Christof, Smidt, Hauke
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Michigan State University 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3910700/
https://www.ncbi.nlm.nih.gov/pubmed/24501624
http://dx.doi.org/10.4056/sigs.3787426
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author Kruse, Thomas
Maillard, Julien
Goodwin, Lynne
Woyke, Tanja
Teshima, Hazuki
Bruce, David
Detter, Chris
Tapia, Roxanne
Han, Cliff
Huntemann, Marcel
Wei, Chia-Lin
Han, James
Chen, Amy
Kyrpides, Nikos
Szeto, Ernest
Markowitz, Victor
Ivanova, Natalia
Pagani, Ioanna
Pati, Amrita
Pitluck, Sam
Nolan, Matt
Holliger, Christof
Smidt, Hauke
author_facet Kruse, Thomas
Maillard, Julien
Goodwin, Lynne
Woyke, Tanja
Teshima, Hazuki
Bruce, David
Detter, Chris
Tapia, Roxanne
Han, Cliff
Huntemann, Marcel
Wei, Chia-Lin
Han, James
Chen, Amy
Kyrpides, Nikos
Szeto, Ernest
Markowitz, Victor
Ivanova, Natalia
Pagani, Ioanna
Pati, Amrita
Pitluck, Sam
Nolan, Matt
Holliger, Christof
Smidt, Hauke
author_sort Kruse, Thomas
collection PubMed
description Dehalobacter restrictus strain PER-K23 (DSM 9455) is the type strain of the species Dehalobacter restrictus. D. restrictus strain PER-K23 grows by organohalide respiration, coupling the oxidation of H(2) to the reductive dechlorination of tetra- or trichloroethene. Growth has not been observed with any other electron donor or acceptor, nor has fermentative growth been shown. Here we introduce the first full genome of a pure culture within the genus Dehalobacter. The 2,943,336 bp long genome contains 2,826 protein coding and 82 RNA genes, including 5 16S rRNA genes. Interestingly, the genome contains 25 predicted reductive dehalogenase genes, the majority of which appear to be full length. The reductive dehalogenase genes are mainly located in two clusters, suggesting a much larger potential for organohalide respiration than previously anticipated.
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spelling pubmed-39107002014-02-05 Complete genome sequence of Dehalobacter restrictus PER-K23(T) Kruse, Thomas Maillard, Julien Goodwin, Lynne Woyke, Tanja Teshima, Hazuki Bruce, David Detter, Chris Tapia, Roxanne Han, Cliff Huntemann, Marcel Wei, Chia-Lin Han, James Chen, Amy Kyrpides, Nikos Szeto, Ernest Markowitz, Victor Ivanova, Natalia Pagani, Ioanna Pati, Amrita Pitluck, Sam Nolan, Matt Holliger, Christof Smidt, Hauke Stand Genomic Sci Short Genome Reports Dehalobacter restrictus strain PER-K23 (DSM 9455) is the type strain of the species Dehalobacter restrictus. D. restrictus strain PER-K23 grows by organohalide respiration, coupling the oxidation of H(2) to the reductive dechlorination of tetra- or trichloroethene. Growth has not been observed with any other electron donor or acceptor, nor has fermentative growth been shown. Here we introduce the first full genome of a pure culture within the genus Dehalobacter. The 2,943,336 bp long genome contains 2,826 protein coding and 82 RNA genes, including 5 16S rRNA genes. Interestingly, the genome contains 25 predicted reductive dehalogenase genes, the majority of which appear to be full length. The reductive dehalogenase genes are mainly located in two clusters, suggesting a much larger potential for organohalide respiration than previously anticipated. Michigan State University 2013-07-30 /pmc/articles/PMC3910700/ /pubmed/24501624 http://dx.doi.org/10.4056/sigs.3787426 Text en Copyright © retained by original authors http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Genome Reports
Kruse, Thomas
Maillard, Julien
Goodwin, Lynne
Woyke, Tanja
Teshima, Hazuki
Bruce, David
Detter, Chris
Tapia, Roxanne
Han, Cliff
Huntemann, Marcel
Wei, Chia-Lin
Han, James
Chen, Amy
Kyrpides, Nikos
Szeto, Ernest
Markowitz, Victor
Ivanova, Natalia
Pagani, Ioanna
Pati, Amrita
Pitluck, Sam
Nolan, Matt
Holliger, Christof
Smidt, Hauke
Complete genome sequence of Dehalobacter restrictus PER-K23(T)
title Complete genome sequence of Dehalobacter restrictus PER-K23(T)
title_full Complete genome sequence of Dehalobacter restrictus PER-K23(T)
title_fullStr Complete genome sequence of Dehalobacter restrictus PER-K23(T)
title_full_unstemmed Complete genome sequence of Dehalobacter restrictus PER-K23(T)
title_short Complete genome sequence of Dehalobacter restrictus PER-K23(T)
title_sort complete genome sequence of dehalobacter restrictus per-k23(t)
topic Short Genome Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3910700/
https://www.ncbi.nlm.nih.gov/pubmed/24501624
http://dx.doi.org/10.4056/sigs.3787426
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