Cargando…
Prokaryotic Super Program Advisory Committee DOE Joint Genome Institute, Walnut Creek, CA, March 27, 2013
The Prokaryotic Super Program Advisory Committee met on March 27, 2013 for their annual review the Prokaryotic Super Program at the DOE Joint Genome Institute. As is the case with any site visit or program review, the objective is to evaluate progress in meeting organizational objectives, provide fe...
Autores principales: | , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Michigan State University
2013
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3910701/ https://www.ncbi.nlm.nih.gov/pubmed/24501639 http://dx.doi.org/10.4056/sigs.4638348 |
_version_ | 1782301996813910016 |
---|---|
author | Garrity, George M. Banfield, Jill Eisen, Jonathan van der Lelie, Niels McMahon, Trina Rusch, Doug DeLong, Edward Moran, Mary Ann Currie, Cameron Furhman, Jed Hallam, Steve Hugenholtz, Phil Moran, Nancy Nelson, Karen Roberts, Richard Stepanauskas, Ramunas |
author_facet | Garrity, George M. Banfield, Jill Eisen, Jonathan van der Lelie, Niels McMahon, Trina Rusch, Doug DeLong, Edward Moran, Mary Ann Currie, Cameron Furhman, Jed Hallam, Steve Hugenholtz, Phil Moran, Nancy Nelson, Karen Roberts, Richard Stepanauskas, Ramunas |
author_sort | Garrity, George M. |
collection | PubMed |
description | The Prokaryotic Super Program Advisory Committee met on March 27, 2013 for their annual review the Prokaryotic Super Program at the DOE Joint Genome Institute. As is the case with any site visit or program review, the objective is to evaluate progress in meeting organizational objectives, provide feedback to from the user-community and to assist the JGI in formulating plans for the coming year. The advisors want to commend the JGI for its central role in developing new technologies and capabilities, and for catalyzing the formation of new collaborative user communities. Highlights of the post-meeting exchanges among the advisors focused on the importance of programmatic initiatives including: • GEBA, which serves as a phylogenetic “base-map” on which our knowledge of functional diversity can be layered. • FEBA, which promises to provide new insights into the physiological capabilities of prokaryotes under highly standardized conditions. • Single-cell genomics technology, which is seen to significantly enhance our ability to interpret genomic and metagenomic data and broaden the scope of the GEBA program to encompass at least a part of the microbial “dark-matter”. • IMG, which is seen to play a central role in JGI programs and is viewed as a strategically important asset in the JGI portfolio. On this latter point, the committee encourages the formation of a strategic relationship between IMG and the Kbase to ensure that the intelligence, deep knowledge and experience captured in the former is not lost. The committee strongly urges the DOE to continue its support for maintaining this critical resource. |
format | Online Article Text |
id | pubmed-3910701 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Michigan State University |
record_format | MEDLINE/PubMed |
spelling | pubmed-39107012014-02-05 Prokaryotic Super Program Advisory Committee DOE Joint Genome Institute, Walnut Creek, CA, March 27, 2013 Garrity, George M. Banfield, Jill Eisen, Jonathan van der Lelie, Niels McMahon, Trina Rusch, Doug DeLong, Edward Moran, Mary Ann Currie, Cameron Furhman, Jed Hallam, Steve Hugenholtz, Phil Moran, Nancy Nelson, Karen Roberts, Richard Stepanauskas, Ramunas Stand Genomic Sci Community Dialog The Prokaryotic Super Program Advisory Committee met on March 27, 2013 for their annual review the Prokaryotic Super Program at the DOE Joint Genome Institute. As is the case with any site visit or program review, the objective is to evaluate progress in meeting organizational objectives, provide feedback to from the user-community and to assist the JGI in formulating plans for the coming year. The advisors want to commend the JGI for its central role in developing new technologies and capabilities, and for catalyzing the formation of new collaborative user communities. Highlights of the post-meeting exchanges among the advisors focused on the importance of programmatic initiatives including: • GEBA, which serves as a phylogenetic “base-map” on which our knowledge of functional diversity can be layered. • FEBA, which promises to provide new insights into the physiological capabilities of prokaryotes under highly standardized conditions. • Single-cell genomics technology, which is seen to significantly enhance our ability to interpret genomic and metagenomic data and broaden the scope of the GEBA program to encompass at least a part of the microbial “dark-matter”. • IMG, which is seen to play a central role in JGI programs and is viewed as a strategically important asset in the JGI portfolio. On this latter point, the committee encourages the formation of a strategic relationship between IMG and the Kbase to ensure that the intelligence, deep knowledge and experience captured in the former is not lost. The committee strongly urges the DOE to continue its support for maintaining this critical resource. Michigan State University 2013-07-30 /pmc/articles/PMC3910701/ /pubmed/24501639 http://dx.doi.org/10.4056/sigs.4638348 Text en Copyright © retained by original authors http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Community Dialog Garrity, George M. Banfield, Jill Eisen, Jonathan van der Lelie, Niels McMahon, Trina Rusch, Doug DeLong, Edward Moran, Mary Ann Currie, Cameron Furhman, Jed Hallam, Steve Hugenholtz, Phil Moran, Nancy Nelson, Karen Roberts, Richard Stepanauskas, Ramunas Prokaryotic Super Program Advisory Committee DOE Joint Genome Institute, Walnut Creek, CA, March 27, 2013 |
title | Prokaryotic Super Program Advisory Committee DOE Joint Genome Institute, Walnut Creek, CA, March 27, 2013 |
title_full | Prokaryotic Super Program Advisory Committee DOE Joint Genome Institute, Walnut Creek, CA, March 27, 2013 |
title_fullStr | Prokaryotic Super Program Advisory Committee DOE Joint Genome Institute, Walnut Creek, CA, March 27, 2013 |
title_full_unstemmed | Prokaryotic Super Program Advisory Committee DOE Joint Genome Institute, Walnut Creek, CA, March 27, 2013 |
title_short | Prokaryotic Super Program Advisory Committee DOE Joint Genome Institute, Walnut Creek, CA, March 27, 2013 |
title_sort | prokaryotic super program advisory committee doe joint genome institute, walnut creek, ca, march 27, 2013 |
topic | Community Dialog |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3910701/ https://www.ncbi.nlm.nih.gov/pubmed/24501639 http://dx.doi.org/10.4056/sigs.4638348 |
work_keys_str_mv | AT garritygeorgem prokaryoticsuperprogramadvisorycommitteedoejointgenomeinstitutewalnutcreekcamarch272013 AT banfieldjill prokaryoticsuperprogramadvisorycommitteedoejointgenomeinstitutewalnutcreekcamarch272013 AT eisenjonathan prokaryoticsuperprogramadvisorycommitteedoejointgenomeinstitutewalnutcreekcamarch272013 AT vanderlelieniels prokaryoticsuperprogramadvisorycommitteedoejointgenomeinstitutewalnutcreekcamarch272013 AT mcmahontrina prokaryoticsuperprogramadvisorycommitteedoejointgenomeinstitutewalnutcreekcamarch272013 AT ruschdoug prokaryoticsuperprogramadvisorycommitteedoejointgenomeinstitutewalnutcreekcamarch272013 AT delongedward prokaryoticsuperprogramadvisorycommitteedoejointgenomeinstitutewalnutcreekcamarch272013 AT moranmaryann prokaryoticsuperprogramadvisorycommitteedoejointgenomeinstitutewalnutcreekcamarch272013 AT curriecameron prokaryoticsuperprogramadvisorycommitteedoejointgenomeinstitutewalnutcreekcamarch272013 AT furhmanjed prokaryoticsuperprogramadvisorycommitteedoejointgenomeinstitutewalnutcreekcamarch272013 AT hallamsteve prokaryoticsuperprogramadvisorycommitteedoejointgenomeinstitutewalnutcreekcamarch272013 AT hugenholtzphil prokaryoticsuperprogramadvisorycommitteedoejointgenomeinstitutewalnutcreekcamarch272013 AT morannancy prokaryoticsuperprogramadvisorycommitteedoejointgenomeinstitutewalnutcreekcamarch272013 AT nelsonkaren prokaryoticsuperprogramadvisorycommitteedoejointgenomeinstitutewalnutcreekcamarch272013 AT robertsrichard prokaryoticsuperprogramadvisorycommitteedoejointgenomeinstitutewalnutcreekcamarch272013 AT stepanauskasramunas prokaryoticsuperprogramadvisorycommitteedoejointgenomeinstitutewalnutcreekcamarch272013 |