Draft Genome Sequence of the Filamentous Cyanobacterium Leptolyngbya sp. Strain Heron Island J, Exhibiting Chromatic Acclimation

Leptolyngbya sp. strain Heron Island is a cyanobacterium exhibiting chromatic acclimation. However, this strain has strong interactions with other bacteria, making it impossible to obtain axenic cultures for sequencing. A protocol involving an analysis of tetranucleotide frequencies, G+C content, an...

Descripción completa

Detalles Bibliográficos
Autores principales: Paul, Robin, Jinkerson, Robert E., Buss, Kristina, Steel, Jason, Mohr, Remus, Hess, Wolfgang R., Chen, Min, Fromme, Petra
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2014
Materias:
Prokaryotes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3916487/
https://www.ncbi.nlm.nih.gov/pubmed/24503993
http://dx.doi.org/10.1128/genomeA.01166-13
_version_ 1782302728420065280
author Paul, Robin
Jinkerson, Robert E.
Buss, Kristina
Steel, Jason
Mohr, Remus
Hess, Wolfgang R.
Chen, Min
Fromme, Petra
author_facet Paul, Robin
Jinkerson, Robert E.
Buss, Kristina
Steel, Jason
Mohr, Remus
Hess, Wolfgang R.
Chen, Min
Fromme, Petra
author_sort Paul, Robin
collection PubMed
description Leptolyngbya sp. strain Heron Island is a cyanobacterium exhibiting chromatic acclimation. However, this strain has strong interactions with other bacteria, making it impossible to obtain axenic cultures for sequencing. A protocol involving an analysis of tetranucleotide frequencies, G+C content, and BLAST searches has been described for separating the cyanobacterial scaffolds from those of its cooccurring bacteria.
format Online
Article
Text
id pubmed-3916487
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher American Society for Microbiology
record_format MEDLINE/PubMed
spelling pubmed-39164872014-02-12 Draft Genome Sequence of the Filamentous Cyanobacterium Leptolyngbya sp. Strain Heron Island J, Exhibiting Chromatic Acclimation Paul, Robin Jinkerson, Robert E. Buss, Kristina Steel, Jason Mohr, Remus Hess, Wolfgang R. Chen, Min Fromme, Petra Genome Announc Prokaryotes Leptolyngbya sp. strain Heron Island is a cyanobacterium exhibiting chromatic acclimation. However, this strain has strong interactions with other bacteria, making it impossible to obtain axenic cultures for sequencing. A protocol involving an analysis of tetranucleotide frequencies, G+C content, and BLAST searches has been described for separating the cyanobacterial scaffolds from those of its cooccurring bacteria. American Society for Microbiology 2014-02-06 /pmc/articles/PMC3916487/ /pubmed/24503993 http://dx.doi.org/10.1128/genomeA.01166-13 Text en Copyright © 2014 Paul et al. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 3.0 Unported license (http://creativecommons.org/licenses/by/3.0/) .
spellingShingle Prokaryotes
Paul, Robin
Jinkerson, Robert E.
Buss, Kristina
Steel, Jason
Mohr, Remus
Hess, Wolfgang R.
Chen, Min
Fromme, Petra
Draft Genome Sequence of the Filamentous Cyanobacterium Leptolyngbya sp. Strain Heron Island J, Exhibiting Chromatic Acclimation
title Draft Genome Sequence of the Filamentous Cyanobacterium Leptolyngbya sp. Strain Heron Island J, Exhibiting Chromatic Acclimation
title_full Draft Genome Sequence of the Filamentous Cyanobacterium Leptolyngbya sp. Strain Heron Island J, Exhibiting Chromatic Acclimation
title_fullStr Draft Genome Sequence of the Filamentous Cyanobacterium Leptolyngbya sp. Strain Heron Island J, Exhibiting Chromatic Acclimation
title_full_unstemmed Draft Genome Sequence of the Filamentous Cyanobacterium Leptolyngbya sp. Strain Heron Island J, Exhibiting Chromatic Acclimation
title_short Draft Genome Sequence of the Filamentous Cyanobacterium Leptolyngbya sp. Strain Heron Island J, Exhibiting Chromatic Acclimation
title_sort draft genome sequence of the filamentous cyanobacterium leptolyngbya sp. strain heron island j, exhibiting chromatic acclimation
topic Prokaryotes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3916487/
https://www.ncbi.nlm.nih.gov/pubmed/24503993
http://dx.doi.org/10.1128/genomeA.01166-13
work_keys_str_mv AT paulrobin draftgenomesequenceofthefilamentouscyanobacteriumleptolyngbyaspstrainheronislandjexhibitingchromaticacclimation
AT jinkersonroberte draftgenomesequenceofthefilamentouscyanobacteriumleptolyngbyaspstrainheronislandjexhibitingchromaticacclimation
AT busskristina draftgenomesequenceofthefilamentouscyanobacteriumleptolyngbyaspstrainheronislandjexhibitingchromaticacclimation
AT steeljason draftgenomesequenceofthefilamentouscyanobacteriumleptolyngbyaspstrainheronislandjexhibitingchromaticacclimation
AT mohrremus draftgenomesequenceofthefilamentouscyanobacteriumleptolyngbyaspstrainheronislandjexhibitingchromaticacclimation
AT hesswolfgangr draftgenomesequenceofthefilamentouscyanobacteriumleptolyngbyaspstrainheronislandjexhibitingchromaticacclimation
AT chenmin draftgenomesequenceofthefilamentouscyanobacteriumleptolyngbyaspstrainheronislandjexhibitingchromaticacclimation
AT frommepetra draftgenomesequenceofthefilamentouscyanobacteriumleptolyngbyaspstrainheronislandjexhibitingchromaticacclimation

Ejemplares similares