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WGDB: Wood Gene Database with search interface
Wood quality can be defined in terms of particular end use with the involvement of several traits. Over the last fifteen years researchers have assessed the wood quality traits in forest trees. The wood quality was categorized as: cell wall biochemical traits, fibre properties include the microfibri...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Biomedical Informatics
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3916818/ https://www.ncbi.nlm.nih.gov/pubmed/24516325 http://dx.doi.org/10.6026/97320630010039 |
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author | Goyal, Neha Ginwal, H.S |
author_facet | Goyal, Neha Ginwal, H.S |
author_sort | Goyal, Neha |
collection | PubMed |
description | Wood quality can be defined in terms of particular end use with the involvement of several traits. Over the last fifteen years researchers have assessed the wood quality traits in forest trees. The wood quality was categorized as: cell wall biochemical traits, fibre properties include the microfibril angle, density and stiffness in loblolly pine [1]. The user friendly and an open-access database has been developed named Wood Gene Database (WGDB) for describing the wood genes along the information of protein and published research articles. It contains 720 wood genes from species namely Pinus, Deodar, fast growing trees namely Poplar, Eucalyptus. WGDB designed to encompass the majority of publicly accessible genes codes for cellulose, hemicellulose and lignin in tree species which are responsive to wood formation and quality. It is an interactive platform for collecting, managing and searching the specific wood genes; it also enables the data mining relate to the genomic information specifically in Arabidopsis thaliana, Populus trichocarpa, Eucalyptus grandis, Pinus taeda, Pinus radiata, Cedrus deodara, Cedrus atlantica. For user convenience, this database is cross linked with public databases namely NCBI, EMBL & Dendrome with the search engine Google for making it more informative and provides bioinformatics tools named BLAST,COBALT. AVAILABILITY: The database is freely available on www.wgdb.in |
format | Online Article Text |
id | pubmed-3916818 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Biomedical Informatics |
record_format | MEDLINE/PubMed |
spelling | pubmed-39168182014-02-10 WGDB: Wood Gene Database with search interface Goyal, Neha Ginwal, H.S Bioinformation Database Wood quality can be defined in terms of particular end use with the involvement of several traits. Over the last fifteen years researchers have assessed the wood quality traits in forest trees. The wood quality was categorized as: cell wall biochemical traits, fibre properties include the microfibril angle, density and stiffness in loblolly pine [1]. The user friendly and an open-access database has been developed named Wood Gene Database (WGDB) for describing the wood genes along the information of protein and published research articles. It contains 720 wood genes from species namely Pinus, Deodar, fast growing trees namely Poplar, Eucalyptus. WGDB designed to encompass the majority of publicly accessible genes codes for cellulose, hemicellulose and lignin in tree species which are responsive to wood formation and quality. It is an interactive platform for collecting, managing and searching the specific wood genes; it also enables the data mining relate to the genomic information specifically in Arabidopsis thaliana, Populus trichocarpa, Eucalyptus grandis, Pinus taeda, Pinus radiata, Cedrus deodara, Cedrus atlantica. For user convenience, this database is cross linked with public databases namely NCBI, EMBL & Dendrome with the search engine Google for making it more informative and provides bioinformatics tools named BLAST,COBALT. AVAILABILITY: The database is freely available on www.wgdb.in Biomedical Informatics 2014-01-29 /pmc/articles/PMC3916818/ /pubmed/24516325 http://dx.doi.org/10.6026/97320630010039 Text en © 2014 Biomedical Informatics This is an open-access article, which permits unrestricted use, distribution, and reproduction in any medium, for non-commercial purposes, provided the original author and source are credited. |
spellingShingle | Database Goyal, Neha Ginwal, H.S WGDB: Wood Gene Database with search interface |
title | WGDB: Wood Gene Database with search interface |
title_full | WGDB: Wood Gene Database with search interface |
title_fullStr | WGDB: Wood Gene Database with search interface |
title_full_unstemmed | WGDB: Wood Gene Database with search interface |
title_short | WGDB: Wood Gene Database with search interface |
title_sort | wgdb: wood gene database with search interface |
topic | Database |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3916818/ https://www.ncbi.nlm.nih.gov/pubmed/24516325 http://dx.doi.org/10.6026/97320630010039 |
work_keys_str_mv | AT goyalneha wgdbwoodgenedatabasewithsearchinterface AT ginwalhs wgdbwoodgenedatabasewithsearchinterface |