Cargando…

A Contig-Based Strategy for the Genome-Wide Discovery of MicroRNAs without Complete Genome Resources

MicroRNAs (miRNAs) are important regulators of many cellular processes and exist in a wide range of eukaryotes. High-throughput sequencing is a mainstream method of miRNA identification through which it is possible to obtain the complete small RNA profile of an organism. Currently, most approaches t...

Descripción completa

Detalles Bibliográficos
Autores principales:	Wen, Jun-Zhi, Liao, Jian-You, Zheng, Ling-Ling, Xu, Hui, Yang, Jian-Hua, Guan, Dao-Gang, Zhang, Si-Min, Zhou, Hui, Qu, Liang-Hu
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2014
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3917882/ https://www.ncbi.nlm.nih.gov/pubmed/24516608 http://dx.doi.org/10.1371/journal.pone.0088179

Ejemplares similares

Genome-wide analysis of chicken snoRNAs provides unique implications for the evolution of vertebrate snoRNAs
por: Shao, Peng, et al.
Publicado: (2009)

MicroRNAs, Genomic Instability and Cancer
por: Vincent, Kimberly, et al.
Publicado: (2014)

Reordering contigs of draft genomes using the Mauve Aligner
por: Rissman, Anna I., et al.
Publicado: (2009)

CISA: Contig Integrator for Sequence Assembly of Bacterial Genomes
por: Lin, Shin-Hung, et al.
Publicado: (2013)

Long-read metagenomics retrieves complete single-contig bacterial genomes from canine feces
por: Cuscó, Anna, et al.
Publicado: (2021)

Contig-Layout-Authenticator (CLA): A Combinatorial Approach to Ordering and Scaffolding of Bacterial Contigs for Comparative Genomics and Molecular Epidemiology
por: Shaik, Sabiha, et al.
Publicado: (2016)

OMACC: an Optical-Map-Assisted Contig Connector for improving de novo genome assembly
por: Chen, Yi-Min, et al.
Publicado: (2013)

Discovery and replication of microRNAs for breast cancer risk using genome-wide profiling
por: Taslim, Cenny, et al.
Publicado: (2016)

Assembling contigs in draft genomes using reversals and block-interchanges
por: Li, Chi-Long, et al.
Publicado: (2013)

CAR: contig assembly of prokaryotic draft genomes using rearrangements
por: Lu, Chin Lung, et al.
Publicado: (2014)

Genome-Wide Analysis of Small RNA and Novel MicroRNA Discovery in Human Acute Lymphoblastic Leukemia Based on Extensive Sequencing Approach
por: Zhang, Hua, et al.
Publicado: (2009)

Genome-Wide Identification of Schistosoma japonicum MicroRNAs Using a Deep-Sequencing Approach
por: Huang, Jian, et al.
Publicado: (2009)

Genome-wide discovery and characterization of long noncoding RNAs in patients with multiple myeloma
por: Lu, Minqiu, et al.
Publicado: (2019)

SprayNPray: user-friendly taxonomic profiling of genome and metagenome contigs
por: Garber, Arkadiy I., et al.
Publicado: (2022)

Genome-wide analysis of microRNA targeting impacted by SNPs in cucumber genome
por: Ling, Jian, et al.
Publicado: (2017)

Genome-Wide Discovery of Small RNAs in Mycobacterium tuberculosis
por: Miotto, Paolo, et al.
Publicado: (2012)

Genome-wide discovery of structured noncoding RNAs in bacteria
por: Stav, Shira, et al.
Publicado: (2019)

Genome-wide identification of Brassica napus microRNAs and their targets in response to cadmium
por: Zhou, Zhao Sheng, et al.
Publicado: (2012)

Genome-wide discovery and differential regulation of conserved and novel microRNAs in chickpea via deep sequencing
por: Jain, Mukesh, et al.
Publicado: (2014)

ContigScape: a Cytoscape plugin facilitating microbial genome gap closing
por: Tang, Biao, et al.
Publicado: (2013)

Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies
por: Roach, Michael J., et al.
Publicado: (2018)

RACS: rapid analysis of ChIP-Seq data for contig based genomes
por: Saettone, Alejandro, et al.
Publicado: (2019)

Detection of plasmid contigs in draft genome assemblies using customized Kraken databases
por: Gomi, Ryota, et al.
Publicado: (2021)

Exo-miRExplorer: A Comprehensive Resource for Exploring and Comparatively Analyzing Exogenous MicroRNAs
por: Zheng, Ling-Ling, et al.
Publicado: (2017)

Genome-wide characterization of new and drought stress responsive microRNAs in Populus euphratica
por: Li, Bosheng, et al.
Publicado: (2011)

Genome-Wide Identification and Analysis of Drought-Responsive Genes and MicroRNAs in Tobacco
por: Yin, Fuqiang, et al.
Publicado: (2013)

Genome-Wide Discovery and Information Resource Development of DNA Polymorphisms in Cassava
por: Sakurai, Tetsuya, et al.
Publicado: (2013)

Projector 2: contig mapping for efficient gap-closure of prokaryotic genome sequence assemblies
por: van Hijum, Sacha A. F. T., et al.
Publicado: (2005)

Generation of Physical Map Contig-Specific Sequences Useful for Whole Genome Sequence Scaffolding
por: Jiang, Yanliang, et al.
Publicado: (2013)

BIGMAC : breaking inaccurate genomes and merging assembled contigs for long read metagenomic assembly
por: Lam, Ka-Kit, et al.
Publicado: (2016)

Multi-CSAR: a web server for scaffolding contigs using multiple reference genomes
por: Liu, Shu-Cheng, et al.
Publicado: (2022)

Genome-Wide Analysis of microRNAs Identifies the Lipid Metabolism Pathway to Be a Defining Factor in Adipose Tissue From Different Sheep
por: Liu, Tian-Yi, et al.
Publicado: (2022)

Genome-Wide Identification and Characterization of MicroRNAs and Target Genes in Lonicera japonica
por: Xia, Heng, et al.
Publicado: (2016)

Genome-wide identification of non-coding RNAs interacted with microRNAs in soybean
por: Ye, Chu-Yu, et al.
Publicado: (2014)

Genome-wide DNA methylome reveals the dysfunction of intronic microRNAs in major psychosis
por: Zhao, Hongying, et al.
Publicado: (2015)

Improving the Completeness of Chromosome-Level Assembly by Recalling Sequences from Lost Contigs
por: Liu, Junyang, et al.
Publicado: (2023)

Genome-wide discovery and characterization of maize long non-coding RNAs
por: Li, Lin, et al.
Publicado: (2014)

Genome-Wide Discovery of Long Non-Coding RNAs in Rainbow Trout
por: Al-Tobasei, Rafet, et al.
Publicado: (2016)

Genome-wide profiles of methylation, microRNAs, and gene expression in chemoresistant breast cancer
por: He, Dong-Xu, et al.
Publicado: (2016)

Genome-wide analysis of salt-responsive and novel microRNAs in Populus euphratica by deep sequencing
por: Si, Jingna, et al.
Publicado: (2014)

Cannot write session to /tmp/vufind_sessions/sess_ppj0ign0sbq9vb5baa20lt4081