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Tunable reporter signal production in feedback-uncoupled arsenic bioreporters

Escherichia coli-based bioreporters for arsenic detection are typically based on the natural feedback loop that controls ars operon transcription. Feedback loops are known to show a wide range linear response to the detriment of the overall amplification of the incoming signal. While being a favoura...

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Autores principales: Merulla, Davide, Hatzimanikatis, Vassily, Meer, Jan Roelof
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley & Sons Ltd 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3918153/
https://www.ncbi.nlm.nih.gov/pubmed/23316865
http://dx.doi.org/10.1111/1751-7915.12031
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author Merulla, Davide
Hatzimanikatis, Vassily
Meer, Jan Roelof
author_facet Merulla, Davide
Hatzimanikatis, Vassily
Meer, Jan Roelof
author_sort Merulla, Davide
collection PubMed
description Escherichia coli-based bioreporters for arsenic detection are typically based on the natural feedback loop that controls ars operon transcription. Feedback loops are known to show a wide range linear response to the detriment of the overall amplification of the incoming signal. While being a favourable feature in controlling arsenic detoxification for the cell, a feedback loop is not necessarily the most optimal for obtaining highest sensitivity and response in a designed cellular reporter for arsenic detection. Here we systematically explore the effects of uncoupling the topology of arsenic sensing circuitry on the developed reporter signal as a function of arsenite concentration input. A model was developed to describe relative ArsR and GFP levels in feedback and uncoupled circuitry, which was used to explore new ArsR-based synthetic circuits. The expression of arsR was then placed under the control of a series of constitutive promoters, which differed in promoter strength, and which could be further modulated by TetR repression. Expression of the reporter gene was maintained under the ArsR-controlled P(ars) promoter. ArsR expression in the systems was measured by using ArsR–mCherry fusion proteins. We find that stronger constitutive ArsR production decreases arsenite-dependent EGFP output from P(ars) and vice versa. This leads to a tunable series of arsenite-dependent EGFP outputs in a variety of systematically characterized circuitries. The higher expression levels and sensitivities of the response curves in the uncoupled circuits may be useful for improving field-test assays using arsenic bioreporters.
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spelling pubmed-39181532014-02-12 Tunable reporter signal production in feedback-uncoupled arsenic bioreporters Merulla, Davide Hatzimanikatis, Vassily Meer, Jan Roelof Microb Biotechnol Research Articles Escherichia coli-based bioreporters for arsenic detection are typically based on the natural feedback loop that controls ars operon transcription. Feedback loops are known to show a wide range linear response to the detriment of the overall amplification of the incoming signal. While being a favourable feature in controlling arsenic detoxification for the cell, a feedback loop is not necessarily the most optimal for obtaining highest sensitivity and response in a designed cellular reporter for arsenic detection. Here we systematically explore the effects of uncoupling the topology of arsenic sensing circuitry on the developed reporter signal as a function of arsenite concentration input. A model was developed to describe relative ArsR and GFP levels in feedback and uncoupled circuitry, which was used to explore new ArsR-based synthetic circuits. The expression of arsR was then placed under the control of a series of constitutive promoters, which differed in promoter strength, and which could be further modulated by TetR repression. Expression of the reporter gene was maintained under the ArsR-controlled P(ars) promoter. ArsR expression in the systems was measured by using ArsR–mCherry fusion proteins. We find that stronger constitutive ArsR production decreases arsenite-dependent EGFP output from P(ars) and vice versa. This leads to a tunable series of arsenite-dependent EGFP outputs in a variety of systematically characterized circuitries. The higher expression levels and sensitivities of the response curves in the uncoupled circuits may be useful for improving field-test assays using arsenic bioreporters. John Wiley & Sons Ltd 2013-09 2013-01-15 /pmc/articles/PMC3918153/ /pubmed/23316865 http://dx.doi.org/10.1111/1751-7915.12031 Text en © 2013 The Authors. Microbial Biotechnology published by John Wiley & Sons Ltd and Society for Applied Microbiology. http://creativecommons.org/licenses/by/3.0/ This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Merulla, Davide
Hatzimanikatis, Vassily
Meer, Jan Roelof
Tunable reporter signal production in feedback-uncoupled arsenic bioreporters
title Tunable reporter signal production in feedback-uncoupled arsenic bioreporters
title_full Tunable reporter signal production in feedback-uncoupled arsenic bioreporters
title_fullStr Tunable reporter signal production in feedback-uncoupled arsenic bioreporters
title_full_unstemmed Tunable reporter signal production in feedback-uncoupled arsenic bioreporters
title_short Tunable reporter signal production in feedback-uncoupled arsenic bioreporters
title_sort tunable reporter signal production in feedback-uncoupled arsenic bioreporters
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3918153/
https://www.ncbi.nlm.nih.gov/pubmed/23316865
http://dx.doi.org/10.1111/1751-7915.12031
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