Cargando…

Protein-Protein Interactions Prediction Based on Iterative Clique Extension with Gene Ontology Filtering

Cliques (maximal complete subnets) in protein-protein interaction (PPI) network are an important resource used to analyze protein complexes and functional modules. Clique-based methods of predicting PPI complement the data defection from biological experiments. However, clique-based predicting metho...

Descripción completa

Detalles Bibliográficos
Autores principales:	Yang, Lei, Tang, Xianglong
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Hindawi Publishing Corporation 2014
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3919085/ https://www.ncbi.nlm.nih.gov/pubmed/24578640 http://dx.doi.org/10.1155/2014/523634

Ejemplares similares

Predicting Disease-Related Proteins Based on Clique Backbone in Protein-Protein Interaction Network
por: Yang, Lei, et al.
Publicado: (2014)

An Iterated Tabu Search Approach for the Clique Partitioning Problem
por: Palubeckis, Gintaras, et al.
Publicado: (2014)

Iterated Clique Reductions in Vertex Weighted Coloring for Large Sparse Graphs
por: Fan, Yi, et al.
Publicado: (2023)

Enrichment of Triticum aestivum gene annotations using ortholog cliques and gene ontologies in other plants
por: Tulpan, Dan, et al.
Publicado: (2015)

Filtering Gene Ontology semantic similarity for identifying protein complexes in large protein interaction networks
por: Wang, Jian, et al.
Publicado: (2012)

Prediction of Protein-Protein Interactions Related to Protein Complexes Based on Protein Interaction Networks
por: Liu, Peng, et al.
Publicado: (2015)

Identifying protein complexes from interaction networks based on clique percolation and distance restriction
por: Wang, Jianxin, et al.
Publicado: (2010)

Chromosomal cliques
por: Dove, Alan W.
Publicado: (2002)

Communities as cliques
por: Fried, Yael, et al.
Publicado: (2016)

Graph embeddings on gene ontology annotations for protein–protein interaction prediction
por: Zhong, Xiaoshi, et al.
Publicado: (2020)

Prediction of yeast protein–protein interaction network: insights from the Gene Ontology and annotations
por: Wu, Xiaomei, et al.
Publicado: (2006)

Using indirect protein interactions for the prediction of Gene Ontology functions
por: Chua, Hon Nian, et al.
Publicado: (2007)

Cliques, coloring, and satisfiability
por: Johnson, David S, et al.
Publicado: (1996)

Quantum Clique Gossiping
por: Li, Bo, et al.
Publicado: (2018)

Predicting gene ontology annotations of orphan GWAS genes using protein-protein interactions
por: Kuppuswamy, Usha, et al.
Publicado: (2014)

A Novel Network-Based Algorithm for Predicting Protein-Protein Interactions Using Gene Ontology
por: Hu, Lun, et al.
Publicado: (2021)

Iteration method for predicting essential proteins based on orthology and protein-protein interaction networks
por: Peng, Wei, et al.
Publicado: (2012)

Predicting the Extension of Biomedical Ontologies
por: Pesquita, Catia, et al.
Publicado: (2012)

False positive reduction in protein-protein interaction predictions using gene ontology annotations
por: Mahdavi, Mahmoud A, et al.
Publicado: (2007)

An ontology-based search engine for protein-protein interactions
por: Park, Byungkyu, et al.
Publicado: (2010)

Ontological visualization of protein-protein interactions
por: Drabkin, Harold J, et al.
Publicado: (2005)

Identification of protein–protein interaction associated functions based on gene ontology and KEGG pathway
por: Yang, Lili, et al.
Publicado: (2022)

Excluding infinite clique minors
por: Robertson, Neil, et al.
Publicado: (1995)

Cliques and cavities in the human connectome
por: Sizemore, Ann E., et al.
Publicado: (2017)

Monochromatic Clique Decompositions of Graphs
por: Liu, Henry, et al.
Publicado: (2015)

TAD cliques predict key features of chromatin organization
por: Liyakat Ali, Tharvesh M., et al.
Publicado: (2021)

Maximal Clique Based Influence Maximization in Networks
por: Mhadhbi, Nizar, et al.
Publicado: (2020)

MFOC-CliqueNet: A CliqueNet-Based Optimal Combination of Multidimensional Features Classification Method for Large-Scale Laser Point Clouds
por: Wang, Lei, et al.
Publicado: (2022)

InfersentPPI: Prediction of Protein-Protein Interaction Using Protein Sentence Embedding With Gene Ontology Information
por: Li, Meijing, et al.
Publicado: (2022)

Gene differential coexpression analysis based on biweight correlation and maximum clique
por: Zheng, Chun-Hou, et al.
Publicado: (2014)

Clique-based data mining for related genes in a biomedical database
por: Matsunaga, Tsutomu, et al.
Publicado: (2009)

Prediction of anti-microtubular target proteins of tubulins and their interacting proteins using Gene Ontology tools
por: Ramesh Babu, Polani B.
Publicado: (2023)

Assessing protein similarity with Gene Ontology and its use in subnuclear localization prediction
por: Lei, Zhengdeng, et al.
Publicado: (2006)

The Gene Ontology in 2010: extensions and refinements
Publicado: (2010)

XcisClique: analysis of regulatory bicliques
por: Pati, Amrita, et al.
Publicado: (2006)

The use of Gene Ontology terms for predicting highly-connected 'hub' nodes in protein-protein interaction networks
por: Hsing, Michael, et al.
Publicado: (2008)

Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression
por: De Bodt, Stefanie, et al.
Publicado: (2009)

TransformerGO: predicting protein–protein interactions by modelling the attention between sets of gene ontology terms
por: Ieremie, Ioan, et al.
Publicado: (2022)

A new, fast algorithm for detecting protein coevolution using maximum compatible cliques
por: Rodionov, Alex, et al.
Publicado: (2011)

Cliques for the identification of gene signatures for colorectal cancer across population
por: Pradhan, Meeta P, et al.
Publicado: (2012)

Cannot write session to /tmp/vufind_sessions/sess_brs5bibnplk38pfsrner3cjqi5