Cargando…

Transcriptome sequencing for high throughput SNP development and genetic mapping in Pea

BACKGROUND: Pea has a complex genome of 4.3 Gb for which only limited genomic resources are available to date. Although SNP markers are now highly valuable for research and modern breeding, only a few are described and used in pea for genetic diversity and linkage analysis. RESULTS: We developed a l...

Descripción completa

Detalles Bibliográficos
Autores principales:	Duarte, Jorge, Rivière, Nathalie, Baranger, Alain, Aubert, Grégoire, Burstin, Judith, Cornet, Laurent, Lavaud, Clément, Lejeune-Hénaut, Isabelle, Martinant, Jean-Pierre, Pichon, Jean-Philippe, Pilet-Nayel, Marie-Laure, Boutet, Gilles
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2014
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3925251/ https://www.ncbi.nlm.nih.gov/pubmed/24521263 http://dx.doi.org/10.1186/1471-2164-15-126

Ejemplares similares

Five Regions of the Pea Genome Co-Control Partial Resistance to D. pinodes, Tolerance to Frost, and Some Architectural or Phenological Traits
por: Boutet, Gilles, et al.
Publicado: (2023)

Genomic Tools in Pea Breeding Programs: Status and Perspectives
por: Tayeh, Nadim, et al.
Publicado: (2015)

SNP discovery and genetic mapping using genotyping by sequencing of whole genome genomic DNA from a pea RIL population
por: Boutet, Gilles, et al.
Publicado: (2016)

Highly-multiplexed SNP genotyping for genetic mapping and germplasm diversity studies in pea
por: Deulvot, Chrystel, et al.
Publicado: (2010)

Comparative Genome-Wide-Association Mapping Identifies Common Loci Controlling Root System Architecture and Resistance to Aphanomyces euteiches in Pea
por: Desgroux, Aurore, et al.
Publicado: (2018)

Genome-wide association study identifies favorable SNP alleles and candidate genes for frost tolerance in pea
por: Beji, Sana, et al.
Publicado: (2020)

Genome-wide association mapping of partial resistance to Aphanomyces euteiches in pea
por: Desgroux, Aurore, et al.
Publicado: (2016)

Advanced backcross QTL analysis and comparative mapping with RIL QTL studies and GWAS provide an overview of QTL and marker haplotype diversity for resistance to Aphanomyces root rot in pea (Pisum sativum)
por: Leprévost, Théo, et al.
Publicado: (2023)

Confirmation of Fusarium root rot resistance QTL Fsp-Ps 2.1 of pea under controlled conditions
por: Coyne, Clarice J., et al.
Publicado: (2019)

Genetic and Pathogenicity Diversity of Aphanomyces euteiches Populations From Pea-Growing Regions in France
por: Quillévéré-Hamard, Anne, et al.
Publicado: (2018)

Gene-based SNP discovery and genetic mapping in pea
por: Sindhu, Anoop, et al.
Publicado: (2014)

Single and multiple resistance QTL delay symptom appearance and slow down root colonization by Aphanomyces euteiches in pea near isogenic lines
por: Lavaud, C., et al.
Publicado: (2016)

A QTL approach in faba bean highlights the conservation of genetic control of frost tolerance among legume species
por: Carrillo-Perdomo, Estefanía, et al.
Publicado: (2022)

Mapping the Genetic Basis of Symbiotic Variation in Legume-Rhizobium Interactions in Medicago truncatula
por: Gorton, Amanda J., et al.
Publicado: (2012)

High-density SNP-based genetic map development and linkage disequilibrium assessment in Brassica napus L
por: Delourme, Régine, et al.
Publicado: (2013)

Patterns of Genetic Structure and Linkage Disequilibrium in a Large Collection of Pea Germplasm
por: Siol, Mathieu, et al.
Publicado: (2017)

Genetic diversity and trait genomic prediction in a pea diversity panel
por: Burstin, Judith, et al.
Publicado: (2015)

Transcriptional Reprogramming of Pea Leaves at Early Reproductive Stages
por: Gallardo, Karine, et al.
Publicado: (2019)

QTL meta-analysis provides a comprehensive view of loci controlling partial resistance to Aphanomyces euteiches in four sources of resistance in pea
por: Hamon, Céline, et al.
Publicado: (2013)

Genomic Prediction in Pea: Effect of Marker Density and Training Population Size and Composition on Prediction Accuracy
por: Tayeh, Nadim, et al.
Publicado: (2015)

De novo construction of a “Gene-space” for diploid plant genome rich in repetitive sequences by an iterative Process of Extraction and Assembly of NGS reads (iPEA protocol) with limited computing resources
por: Aluome, Christelle, et al.
Publicado: (2016)

Translational Genomics in Legumes Allowed Placing In Silico 5460 Unigenes on the Pea Functional Map and Identified Candidate Genes in Pisum sativum L.
por: Bordat, Amandine, et al.
Publicado: (2011)

High throughput SNP discovery and genotyping in hexaploid wheat
por: Rimbert, Hélène, et al.
Publicado: (2018)

Development of new genetic resources for faba bean (Vicia faba L.) breeding through the discovery of gene-based SNP markers and the construction of a high-density consensus map
por: Carrillo-Perdomo, E., et al.
Publicado: (2020)

Expression of cell wall related genes in basal and ear internodes of silking brown-midrib-3, caffeic acid O-methyltransferase (COMT) down-regulated, and normal maize plants
por: Guillaumie, Sabine, et al.
Publicado: (2008)

SNP-PHAGE – High throughput SNP discovery pipeline
por: Matukumalli, Lakshmi K, et al.
Publicado: (2006)

High throughput genotyping of structural variations in a complex plant genome using an original Affymetrix® axiom® array
por: Mabire, Clément, et al.
Publicado: (2019)

High-Throughput SNP Genotyping
por: Jenkins, Suzanne, et al.
Publicado: (2002)

Bean pod mottle virus: a new powerful tool for functional genomics studies in Pisum sativum
por: Meziadi, Chouaib, et al.
Publicado: (2016)

Natural diversity in the model legume Medicago truncatula allows identifying distinct genetic mechanisms conferring partial resistance to Verticillium wilt
por: Ben, Cécile, et al.
Publicado: (2013)

Rhizosphere Bacterial Networks, but Not Diversity, Are Impacted by Pea-Wheat Intercropping
por: Pivato, Barbara, et al.
Publicado: (2021)

Meta-analysis of QTL reveals the genetic control of yield-related traits and seed protein content in pea
por: Klein, Anthony, et al.
Publicado: (2020)

Co-inoculation of a Pea Core-Collection with Diverse Rhizobial Strains Shows Competitiveness for Nodulation and Efficiency of Nitrogen Fixation Are Distinct traits in the Interaction
por: Bourion, Virginie, et al.
Publicado: (2018)

SNP discovery by high-throughput sequencing in soybean
por: Wu, Xiaolei, et al.
Publicado: (2010)

Assembly of the 81.6 Mb centromere of pea chromosome 6 elucidates the structure and evolution of metapolycentric chromosomes
por: Macas, Jiří, et al.
Publicado: (2023)

Development of a knowledge graph framework to ease and empower translational approaches in plant research: a use-case on grain legumes
por: Imbert, Baptiste, et al.
Publicado: (2023)

Quantitative Resistance to Plant Pathogens in Pyramiding Strategies for Durable Crop Protection
por: Pilet-Nayel, Marie-Laure, et al.
Publicado: (2017)

Development and implementation of high-throughput SNP genotyping in barley
por: Close, Timothy J, et al.
Publicado: (2009)

Identification of quantitative trait loci (QTL) controlling resistance to pea weevil (Bruchus pisorum) in a high-density integrated DArTseq SNP-based genetic map of pea
por: Aznar-Fernández, Thais, et al.
Publicado: (2020)

Development of a Sequence-Based Reference Physical Map of Pea (Pisum sativum L.)
por: Gali, Krishna Kishore, et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_g290qhprtoj4k72oemv9tsd7q0