Cargando…

NanoCAGE analysis of the mouse olfactory epithelium identifies the expression of vomeronasal receptors and of proximal LINE elements

By coupling laser capture microdissection to nanoCAGE technology and next-generation sequencing we have identified the genome-wide collection of active promoters in the mouse Main Olfactory Epithelium (MOE). Transcription start sites (TSSs) for the large majority of Olfactory Receptors (ORs) have be...

Descripción completa

Detalles Bibliográficos
Autores principales:	Pascarella, Giovanni, Lazarevic, Dejan, Plessy, Charles, Bertin, Nicolas, Akalin, Altuna, Vlachouli, Christina, Simone, Roberto, Faulkner, Geoffrey J., Zucchelli, Silvia, Kawai, Jun, Daub, Carsten O., Hayashizaki, Yoshihide, Lenhard, Boris, Carninci, Piero, Gustincich, Stefano
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2014
Materias:	Neuroscience
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3927265/ https://www.ncbi.nlm.nih.gov/pubmed/24600346 http://dx.doi.org/10.3389/fncel.2014.00041

Ejemplares similares

Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan
por: Plessy, Charles, et al.
Publicado: (2010)

Mesencephalic dopaminergic neurons express a repertoire of olfactory receptors and respond to odorant-like molecules
por: Grison, Alice, et al.
Publicado: (2014)

MOIRAI: a compact workflow system for CAGE analysis
por: Hasegawa, Akira, et al.
Publicado: (2014)

CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis
por: Kawaji, Hideya, et al.
Publicado: (2006)

Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data
por: Balwierz, Piotr J, et al.
Publicado: (2009)

Transcriptional features of genomic regulatory blocks
por: Akalin, Altuna, et al.
Publicado: (2009)

Linking FANTOM5 CAGE peaks to annotations with CAGEscan
por: Bertin, Nicolas, et al.
Publicado: (2017)

Building promoter aware transcriptional regulatory networks using siRNA perturbation and deepCAGE
por: Vitezic, Morana, et al.
Publicado: (2010)

Beyond the FANTOM4
por: Suzuki, Harukazu, et al.
Publicado: (2010)

A Method for Similarity Search of Genomic Positional Expression Using CAGE
por: Seno, Shigeto, et al.
Publicado: (2006)

Large-scale clustering of CAGE tag expression data
por: Shimokawa, Kazuro, et al.
Publicado: (2007)

CAGE-TSSchip: promoter-based expression profiling using the 5'-leading label of capped transcripts
por: Katayama, Shintaro, et al.
Publicado: (2007)

Transcriptional and structural impact of TATA-initiation site spacing in mammalian core promoters
por: Ponjavic, Jasmina, et al.
Publicado: (2006)

Comparison of RNA- or LNA-hybrid oligonucleotides in template-switching reactions for high-speed sequencing library preparation
por: Harbers, Matthias, et al.
Publicado: (2013)

CAGEr: precise TSS data retrieval and high-resolution promoterome mining for integrative analyses
por: Haberle, Vanja, et al.
Publicado: (2015)

Genome Network and FANTOM3: Assessing the Complexity of the Transcriptome
por: Hayashizaki, Yoshihide, et al.
Publicado: (2006)

Pregnancy and estrogen enhance neural progenitor-cell proliferation in the vomeronasal sensory epithelium
por: Oboti, Livio, et al.
Publicado: (2015)

Morphology of cat vomeronasal organ non-sensory epithelium during postnatal development
por: Elgayar, Sanaa A. M., et al.
Publicado: (2017)

Identification of neutrophils in the nonsensory epithelium of the vomeronasal organ in virus-antibody-free rats
por: Getchell, Marilyn L., et al.
Publicado: (1995)

Inflammation interferes with chemoreception in pigs by altering the neuronal layout of the vomeronasal sensory epithelium
por: Mechin, Violaine, et al.
Publicado: (2022)

RECLU: a pipeline to discover reproducible transcriptional start sites and their alternative regulation using capped analysis of gene expression (CAGE)
por: Ohmiya, Hiroko, et al.
Publicado: (2014)

Core promoter structure and genomic context reflect histone 3 lysine 9 acetylation patterns
por: Kratz, Anton, et al.
Publicado: (2010)

Translog, a web browser for studying the expression divergence of homologous genes
por: Dong, Xianjun, et al.
Publicado: (2010)

Main Olfactory and Vomeronasal Epithelium Are Differently Affected in Niemann-Pick Disease Type C1
por: Witt, Martin, et al.
Publicado: (2018)

SDRF2GRAPH – a visualization tool of a spreadsheet-based description of experimental processes
por: Kawaji, Hideya, et al.
Publicado: (2009)

SAMStat: monitoring biases in next generation sequencing data
por: Lassmann, Timo, et al.
Publicado: (2011)

TagDust—a program to eliminate artifacts from next generation sequencing data
por: Lassmann, Timo, et al.
Publicado: (2009)

NGSView: an extensible open source editor for next-generation sequencing data
por: Arner, Erik, et al.
Publicado: (2010)

Hidden layers of human small RNAs
por: Kawaji, Hideya, et al.
Publicado: (2008)

Suppression of artifacts and barcode bias in high-throughput transcriptome analyses utilizing template switching
por: Tang, Dave T. P., et al.
Publicado: (2013)

Cyst of the Vomeronasal Organ
por: Levin, Joseph J.
Publicado: (1925)

Heterotachy in Mammalian Promoter Evolution
por: Taylor, Martin S, et al.
Publicado: (2006)

Two independent transcription initiation codes overlap on vertebrate core promoters
por: Haberle, Vanja, et al.
Publicado: (2014)

Profiling transcription initiation in human aged brain using deep-CAGE
por: Francescatto, Margherita, et al.
Publicado: (2011)

Identification of antisense long noncoding RNAs that function as SINEUPs in human cells
por: Schein, Aleks, et al.
Publicado: (2016)

High Sensitivity TSS Prediction: Estimates of Locations Where TSS Cannot Occur
por: Schaefer, Ulf, et al.
Publicado: (2010)

The Short Non-Coding Transcriptome of the Protozoan Parasite Trypanosoma cruzi
por: Franzén, Oscar, et al.
Publicado: (2011)

Molecular Organization of Vomeronasal Chemoreception
por: Isogai, Yoh, et al.
Publicado: (2011)

Antisense Transcription in Loci Associated to Hereditary Neurodegenerative Diseases
por: Zucchelli, Silvia, et al.
Publicado: (2019)

NanoCAGE-XL and CapFilter: an approach to genome wide identification of high confidence transcription start sites
por: Cumbie, Jason S., et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_mmmdcfqahqa8lhjkne0hg0q422