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Hybrid RHF/MP2 Geometry Optimizations with the Effective Fragment Molecular Orbital Method
The frozen domain effective fragment molecular orbital method is extended to allow for the treatment of a single fragment at the MP2 level of theory. The approach is applied to the conversion of chorismate to prephenate by Chorismate Mutase, where the substrate is treated at the MP2 level of theory...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3928295/ https://www.ncbi.nlm.nih.gov/pubmed/24558430 http://dx.doi.org/10.1371/journal.pone.0088800 |
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author | Christensen, Anders S. Steinmann, Casper Fedorov, Dmitri G. Jensen, Jan H. |
author_facet | Christensen, Anders S. Steinmann, Casper Fedorov, Dmitri G. Jensen, Jan H. |
author_sort | Christensen, Anders S. |
collection | PubMed |
description | The frozen domain effective fragment molecular orbital method is extended to allow for the treatment of a single fragment at the MP2 level of theory. The approach is applied to the conversion of chorismate to prephenate by Chorismate Mutase, where the substrate is treated at the MP2 level of theory while the rest of the system is treated at the RHF level. MP2 geometry optimization is found to lower the barrier by up to 3.5 kcal/mol compared to RHF optimzations and ONIOM energy refinement and leads to a smoother convergence with respect to the basis set for the reaction profile. For double zeta basis sets the increase in CPU time relative to RHF is roughly a factor of two. |
format | Online Article Text |
id | pubmed-3928295 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-39282952014-02-20 Hybrid RHF/MP2 Geometry Optimizations with the Effective Fragment Molecular Orbital Method Christensen, Anders S. Steinmann, Casper Fedorov, Dmitri G. Jensen, Jan H. PLoS One Research Article The frozen domain effective fragment molecular orbital method is extended to allow for the treatment of a single fragment at the MP2 level of theory. The approach is applied to the conversion of chorismate to prephenate by Chorismate Mutase, where the substrate is treated at the MP2 level of theory while the rest of the system is treated at the RHF level. MP2 geometry optimization is found to lower the barrier by up to 3.5 kcal/mol compared to RHF optimzations and ONIOM energy refinement and leads to a smoother convergence with respect to the basis set for the reaction profile. For double zeta basis sets the increase in CPU time relative to RHF is roughly a factor of two. Public Library of Science 2014-02-18 /pmc/articles/PMC3928295/ /pubmed/24558430 http://dx.doi.org/10.1371/journal.pone.0088800 Text en © 2014 Christensen et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Christensen, Anders S. Steinmann, Casper Fedorov, Dmitri G. Jensen, Jan H. Hybrid RHF/MP2 Geometry Optimizations with the Effective Fragment Molecular Orbital Method |
title | Hybrid RHF/MP2 Geometry Optimizations with the Effective Fragment Molecular Orbital Method |
title_full | Hybrid RHF/MP2 Geometry Optimizations with the Effective Fragment Molecular Orbital Method |
title_fullStr | Hybrid RHF/MP2 Geometry Optimizations with the Effective Fragment Molecular Orbital Method |
title_full_unstemmed | Hybrid RHF/MP2 Geometry Optimizations with the Effective Fragment Molecular Orbital Method |
title_short | Hybrid RHF/MP2 Geometry Optimizations with the Effective Fragment Molecular Orbital Method |
title_sort | hybrid rhf/mp2 geometry optimizations with the effective fragment molecular orbital method |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3928295/ https://www.ncbi.nlm.nih.gov/pubmed/24558430 http://dx.doi.org/10.1371/journal.pone.0088800 |
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