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Oil palm genome sequence reveals divergence of interfertile species in old and new worlds
Oil palm is the most productive oil-bearing crop. Planted on only 5% of the total vegetable oil acreage, palm oil accounts for 33% of vegetable oil, and 45% of edible oil worldwide, but increased cultivation competes with dwindling rainforest reserves. We report the 1.8 gigabase (Gb) genome sequence...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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2013
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3929164/ https://www.ncbi.nlm.nih.gov/pubmed/23883927 http://dx.doi.org/10.1038/nature12309 |
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author | Singh, Rajinder Ong-Abdullah, Meilina Low, Eng-Ti Leslie Manaf, Mohamad Arif Abdul Rosli, Rozana Nookiah, Rajanaidu Ooi, Leslie Cheng-Li Ooi, Siew–Eng Chan, Kuang-Lim Halim, Mohd Amin Azizi, Norazah Nagappan, Jayanthi Bacher, Blaire Lakey, Nathan Smith, Steven W He, Dong Hogan, Michael Budiman, Muhammad A Lee, Ernest K DeSalle, Rob Kudrna, David Goicoechea, Jose Louis Wing, Rod Wilson, Richard K Fulton, Robert S Ordway, Jared M Martienssen, Robert A Sambanthamurthi, Ravigadevi |
author_facet | Singh, Rajinder Ong-Abdullah, Meilina Low, Eng-Ti Leslie Manaf, Mohamad Arif Abdul Rosli, Rozana Nookiah, Rajanaidu Ooi, Leslie Cheng-Li Ooi, Siew–Eng Chan, Kuang-Lim Halim, Mohd Amin Azizi, Norazah Nagappan, Jayanthi Bacher, Blaire Lakey, Nathan Smith, Steven W He, Dong Hogan, Michael Budiman, Muhammad A Lee, Ernest K DeSalle, Rob Kudrna, David Goicoechea, Jose Louis Wing, Rod Wilson, Richard K Fulton, Robert S Ordway, Jared M Martienssen, Robert A Sambanthamurthi, Ravigadevi |
author_sort | Singh, Rajinder |
collection | PubMed |
description | Oil palm is the most productive oil-bearing crop. Planted on only 5% of the total vegetable oil acreage, palm oil accounts for 33% of vegetable oil, and 45% of edible oil worldwide, but increased cultivation competes with dwindling rainforest reserves. We report the 1.8 gigabase (Gb) genome sequence of the African oil palm Elaeis guineensis, the predominant source of worldwide oil production. 1.535 Gb of assembled sequence and transcriptome data from 30 tissue types were used to predict at least 34,802 genes, including oil biosynthesis genes and homologues of WRINKLED1 (WRI1), and other transcriptional regulators(1), which are highly expressed in the kernel. We also report the draft sequence of the S. American oil palm Elaeis oleifera, which has the same number of chromosomes (2n=32) and produces fertile interspecific hybrids with E. guineensis(2), but appears to have diverged in the new world. Segmental duplications of chromosome arms define the palaeotetraploid origin of palm trees. The oil palm sequence enables the discovery of genes for important traits as well as somaclonal epigenetic alterations which restrict the use of clones in commercial plantings(3), and thus helps achieve sustainability for biofuels and edible oils, reducing the rainforest footprint of this tropical plantation crop. |
format | Online Article Text |
id | pubmed-3929164 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
record_format | MEDLINE/PubMed |
spelling | pubmed-39291642014-02-19 Oil palm genome sequence reveals divergence of interfertile species in old and new worlds Singh, Rajinder Ong-Abdullah, Meilina Low, Eng-Ti Leslie Manaf, Mohamad Arif Abdul Rosli, Rozana Nookiah, Rajanaidu Ooi, Leslie Cheng-Li Ooi, Siew–Eng Chan, Kuang-Lim Halim, Mohd Amin Azizi, Norazah Nagappan, Jayanthi Bacher, Blaire Lakey, Nathan Smith, Steven W He, Dong Hogan, Michael Budiman, Muhammad A Lee, Ernest K DeSalle, Rob Kudrna, David Goicoechea, Jose Louis Wing, Rod Wilson, Richard K Fulton, Robert S Ordway, Jared M Martienssen, Robert A Sambanthamurthi, Ravigadevi Nature Article Oil palm is the most productive oil-bearing crop. Planted on only 5% of the total vegetable oil acreage, palm oil accounts for 33% of vegetable oil, and 45% of edible oil worldwide, but increased cultivation competes with dwindling rainforest reserves. We report the 1.8 gigabase (Gb) genome sequence of the African oil palm Elaeis guineensis, the predominant source of worldwide oil production. 1.535 Gb of assembled sequence and transcriptome data from 30 tissue types were used to predict at least 34,802 genes, including oil biosynthesis genes and homologues of WRINKLED1 (WRI1), and other transcriptional regulators(1), which are highly expressed in the kernel. We also report the draft sequence of the S. American oil palm Elaeis oleifera, which has the same number of chromosomes (2n=32) and produces fertile interspecific hybrids with E. guineensis(2), but appears to have diverged in the new world. Segmental duplications of chromosome arms define the palaeotetraploid origin of palm trees. The oil palm sequence enables the discovery of genes for important traits as well as somaclonal epigenetic alterations which restrict the use of clones in commercial plantings(3), and thus helps achieve sustainability for biofuels and edible oils, reducing the rainforest footprint of this tropical plantation crop. 2013-07-24 2013-08-15 /pmc/articles/PMC3929164/ /pubmed/23883927 http://dx.doi.org/10.1038/nature12309 Text en Users may view, print, copy, download and text and data- mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use: http://www.nature.com/authors/editorial_policies/license.html#terms |
spellingShingle | Article Singh, Rajinder Ong-Abdullah, Meilina Low, Eng-Ti Leslie Manaf, Mohamad Arif Abdul Rosli, Rozana Nookiah, Rajanaidu Ooi, Leslie Cheng-Li Ooi, Siew–Eng Chan, Kuang-Lim Halim, Mohd Amin Azizi, Norazah Nagappan, Jayanthi Bacher, Blaire Lakey, Nathan Smith, Steven W He, Dong Hogan, Michael Budiman, Muhammad A Lee, Ernest K DeSalle, Rob Kudrna, David Goicoechea, Jose Louis Wing, Rod Wilson, Richard K Fulton, Robert S Ordway, Jared M Martienssen, Robert A Sambanthamurthi, Ravigadevi Oil palm genome sequence reveals divergence of interfertile species in old and new worlds |
title | Oil palm genome sequence reveals divergence of interfertile species in old and new worlds |
title_full | Oil palm genome sequence reveals divergence of interfertile species in old and new worlds |
title_fullStr | Oil palm genome sequence reveals divergence of interfertile species in old and new worlds |
title_full_unstemmed | Oil palm genome sequence reveals divergence of interfertile species in old and new worlds |
title_short | Oil palm genome sequence reveals divergence of interfertile species in old and new worlds |
title_sort | oil palm genome sequence reveals divergence of interfertile species in old and new worlds |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3929164/ https://www.ncbi.nlm.nih.gov/pubmed/23883927 http://dx.doi.org/10.1038/nature12309 |
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