Cargando…
Major aging-associated RNA expressions change at two distinct age-positions
BACKGROUND: Genome-wide expression profiles are altered during biological aging and can describe molecular regulation of tissue degeneration. Age-regulated mRNA expression trends from cross-sectional studies could describe how aging progresses. We developed a novel statistical methodology to identif...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2014
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3930826/ https://www.ncbi.nlm.nih.gov/pubmed/24524210 http://dx.doi.org/10.1186/1471-2164-15-132 |
_version_ | 1782304590530609152 |
---|---|
author | Gheorghe, Marius Snoeck, Marc Emmerich, Michael Bäck, Thomas Goeman, Jelle J Raz, Vered |
author_facet | Gheorghe, Marius Snoeck, Marc Emmerich, Michael Bäck, Thomas Goeman, Jelle J Raz, Vered |
author_sort | Gheorghe, Marius |
collection | PubMed |
description | BACKGROUND: Genome-wide expression profiles are altered during biological aging and can describe molecular regulation of tissue degeneration. Age-regulated mRNA expression trends from cross-sectional studies could describe how aging progresses. We developed a novel statistical methodology to identify age-regulated expression trends in cross-sectional datasets. RESULTS: We studied six cross-sectional RNA expression profiles from different human tissues. Our methodology, capable of overcoming technical and genetic background differences, identified an age-regulation in four of the tissues. For the identification of expression trends, five regression models were compared and the quadratic model was found as the most suitable for this study. After k-means clustering of the age-associated probes, expression trends were found to change at two major age-positions in brain cortex and in Vastus lateralis muscles. The first age-position was found to occur during the fifth decade and a later one during the eighth decade. In kidney cortex, however, only one age-position was identified correlating with a late age-position. Functional mapping of genes at each age-position suggests that calcium homeostasis and lipid metabolisms are initially affected and subsequently, in elderly mitochondria, apoptosis and hormonal signaling pathways are affected. CONCLUSIONS: Our results suggest that age-associated temporal changes in human tissues progress at distinct age-positions, which differ between tissues and in their molecular composition. |
format | Online Article Text |
id | pubmed-3930826 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-39308262014-02-22 Major aging-associated RNA expressions change at two distinct age-positions Gheorghe, Marius Snoeck, Marc Emmerich, Michael Bäck, Thomas Goeman, Jelle J Raz, Vered BMC Genomics Methodology Article BACKGROUND: Genome-wide expression profiles are altered during biological aging and can describe molecular regulation of tissue degeneration. Age-regulated mRNA expression trends from cross-sectional studies could describe how aging progresses. We developed a novel statistical methodology to identify age-regulated expression trends in cross-sectional datasets. RESULTS: We studied six cross-sectional RNA expression profiles from different human tissues. Our methodology, capable of overcoming technical and genetic background differences, identified an age-regulation in four of the tissues. For the identification of expression trends, five regression models were compared and the quadratic model was found as the most suitable for this study. After k-means clustering of the age-associated probes, expression trends were found to change at two major age-positions in brain cortex and in Vastus lateralis muscles. The first age-position was found to occur during the fifth decade and a later one during the eighth decade. In kidney cortex, however, only one age-position was identified correlating with a late age-position. Functional mapping of genes at each age-position suggests that calcium homeostasis and lipid metabolisms are initially affected and subsequently, in elderly mitochondria, apoptosis and hormonal signaling pathways are affected. CONCLUSIONS: Our results suggest that age-associated temporal changes in human tissues progress at distinct age-positions, which differ between tissues and in their molecular composition. BioMed Central 2014-02-14 /pmc/articles/PMC3930826/ /pubmed/24524210 http://dx.doi.org/10.1186/1471-2164-15-132 Text en Copyright © 2014 Gheorghe et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. |
spellingShingle | Methodology Article Gheorghe, Marius Snoeck, Marc Emmerich, Michael Bäck, Thomas Goeman, Jelle J Raz, Vered Major aging-associated RNA expressions change at two distinct age-positions |
title | Major aging-associated RNA expressions change at two distinct age-positions |
title_full | Major aging-associated RNA expressions change at two distinct age-positions |
title_fullStr | Major aging-associated RNA expressions change at two distinct age-positions |
title_full_unstemmed | Major aging-associated RNA expressions change at two distinct age-positions |
title_short | Major aging-associated RNA expressions change at two distinct age-positions |
title_sort | major aging-associated rna expressions change at two distinct age-positions |
topic | Methodology Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3930826/ https://www.ncbi.nlm.nih.gov/pubmed/24524210 http://dx.doi.org/10.1186/1471-2164-15-132 |
work_keys_str_mv | AT gheorghemarius majoragingassociatedrnaexpressionschangeattwodistinctagepositions AT snoeckmarc majoragingassociatedrnaexpressionschangeattwodistinctagepositions AT emmerichmichael majoragingassociatedrnaexpressionschangeattwodistinctagepositions AT backthomas majoragingassociatedrnaexpressionschangeattwodistinctagepositions AT goemanjellej majoragingassociatedrnaexpressionschangeattwodistinctagepositions AT razvered majoragingassociatedrnaexpressionschangeattwodistinctagepositions |