Cargando…

RNA CoMPASS: A Dual Approach for Pathogen and Host Transcriptome Analysis of RNA-Seq Datasets

High-throughput RNA sequencing (RNA-seq) has become an instrumental assay for the analysis of multiple aspects of an organism's transcriptome. Further, the analysis of a biological specimen's associated microbiome can also be performed using RNA-seq data and this application is gaining int...

Descripción completa

Detalles Bibliográficos
Autores principales:	Xu, Guorong, Strong, Michael J., Lacey, Michelle R., Baribault, Carl, Flemington, Erik K., Taylor, Christopher M.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2014
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3934900/ https://www.ncbi.nlm.nih.gov/pubmed/24586784 http://dx.doi.org/10.1371/journal.pone.0089445

Ejemplares similares

Resolving host–pathogen interactions by dual RNA-seq
por: Westermann, Alexander J., et al.
Publicado: (2017)

DualSeqDB: the host–pathogen dual RNA sequencing database for infection processes
por: Macho Rendón, Javier, et al.
Publicado: (2020)

Assessment of viral RNA in idiopathic pulmonary fibrosis using RNA-seq
por: Yin, Qinyan, et al.
Publicado: (2020)

Dual RNA-seq of Nontypeable Haemophilus influenzae and Host Cell Transcriptomes Reveals Novel Insights into Host-Pathogen Cross Talk
por: Baddal, Buket, et al.
Publicado: (2015)

EncoMPASS: an online database for analyzing structure and symmetry in membrane proteins
por: Sarti, Edoardo, et al.
Publicado: (2019)

CoMPASs: IOn programme (Care Of Memory Problems in Advanced Stages of dementia: Improving Our Knowledge): protocol for a mixed methods study
por: Jones, Louise, et al.
Publicado: (2012)

Dual RNA-seq of Orientia tsutsugamushi informs on host-pathogen interactions for this neglected intracellular human pathogen
por: Mika-Gospodorz, Bozena, et al.
Publicado: (2020)

Inferring Polymorphism-Induced Regulatory Gene Networks Active in Human Lymphocyte Cell Lines by Weighted Linear Mixed Model Analysis of Multiple RNA-Seq Datasets
por: Zhang, Wensheng, et al.
Publicado: (2013)

Erratum for Baddal et al., Dual RNA-seq of Nontypeable Haemophilus influenzae and Host Cell Transcriptomes Reveals Novel Insights into Host-Pathogen Cross Talk
por: Baddal, Buket, et al.
Publicado: (2016)

Dual RNA-Seq of H5N1 Avian Influenza Virus and Host Cell Transcriptomes Reveals Novel Insights Into Host-Pathogen Cross Talk
por: Wang, Qiao, et al.
Publicado: (2022)

Dual RNA-Seq of Mtb-Infected Macrophages In Vivo Reveals Ontologically Distinct Host-Pathogen Interactions
por: Pisu, Davide, et al.
Publicado: (2020)

Dual RNA-Seq Enables Full-Genome Assembly of Measles Virus and Characterization of Host–Pathogen Interactions
por: Karamitros, Timokratis, et al.
Publicado: (2021)

Transcriptome dataset of human corneal endothelium based on ribosomal RNA-depleted RNA-Seq data
por: Tokuda, Yuichi, et al.
Publicado: (2020)

Novel RNA Extraction Method for Dual RNA-seq Analysis of Pathogen and Host in the Early Stages of Yersinia pestis Pulmonary Infection
por: Israeli, Ofir, et al.
Publicado: (2021)

Isoform-level microRNA-155 target prediction using RNA-seq
por: Deng, Nan, et al.
Publicado: (2011)

Transcriptome dataset for RNA-seq analysis of axolotl embryonic oropharyngeal endoderm explants
por: Marazzi, Lauren, et al.
Publicado: (2020)

Meta-Analysis of Dilated Cardiomyopathy Using Cardiac RNA-Seq Transcriptomic Datasets
por: Alimadadi, Ahmad, et al.
Publicado: (2020)

Host–Pathogen Interactions between Xanthomonas fragariae and Its Host Fragaria × ananassa Investigated with a Dual RNA-Seq Analysis
por: Gétaz, Michael, et al.
Publicado: (2020)

Single-cell RNA-seq reveals transcriptomic heterogeneity mediated by host–pathogen dynamics in lymphoblastoid cell lines
por: SoRelle, Elliott D, et al.
Publicado: (2021)

Modified Prehospital Acute Stroke Severity (mPASS) Scale to Predict Emergent Large Arterial Occlusion
por: Si, Xiaoli, et al.
Publicado: (2021)

Dataset of dual RNA-seq mapping in visceral leishmaniasis: Inquiry on parasite transcripts in human blood transcriptome upon Leishmania infantum infection
por: Gomes, Ellen, et al.
Publicado: (2022)

scDual-Seq: mapping the gene regulatory program of Salmonella infection by host and pathogen single-cell RNA-sequencing
por: Avital, Gal, et al.
Publicado: (2017)

Dual RNA-Seq Unveils the Role of the Pseudomonas plecoglossicida fliA Gene in Pathogen-Host Interaction with Larimichthys crocea
por: Sun, Yujia, et al.
Publicado: (2019)

Dual Host and Pathogen RNA-Seq Analysis Unravels Chicken Genes Potentially Involved in Resistance to Highly Pathogenic Avian Influenza Virus Infection
por: Perlas, Albert, et al.
Publicado: (2021)

Correction: Single-cell RNA-seq reveals transcriptomic heterogeneity mediated by host–pathogen dynamics in lymphoblastoid cell lines
por: SoRelle, Elliott D, et al.
Publicado: (2021)

Construction of the Mobility to Participation Assessment Scale for Stroke (MPASS) and Testing Its Validity and Reliability in Persons With Stroke in Thailand
por: Nawarat, Jiraphat, et al.
Publicado: (2022)

A proteomic and RNA-seq transcriptomic dataset of capsaicin-aggravated mouse chronic colitis model
por: Chen, Kexin, et al.
Publicado: (2022)

Dual RNA-Seq Unveils Pseudomonas plecoglossicida htpG Gene Functions During Host-Pathogen Interactions With Epinephelus coioides
por: Huang, Lixing, et al.
Publicado: (2019)

Dual RNA-Seq characterization of host and pathogen gene expression in liver cells infected with Crimean-Congo Hemorrhagic Fever Virus
por: Kozak, Robert A., et al.
Publicado: (2020)

RNA splicing analysis using heterogeneous and large RNA-seq datasets
por: Vaquero-Garcia, Jorge, et al.
Publicado: (2023)

Discovery of Protein–lncRNA Interactions by Integrating Large-Scale CLIP-Seq and RNA-Seq Datasets
por: Li, Jun-Hao, et al.
Publicado: (2015)

SQUID: transcriptomic structural variation detection from RNA-seq
por: Ma, Cong, et al.
Publicado: (2018)

Corrigendum: Dual Host and Pathogen RNA-Seq Analysis Unravels Chicken Genes Potentially Involved in Resistance to Highly Pathogenic Avian Influenza Virus Infection
por: Perlas, Albert, et al.
Publicado: (2022)

Threshold-seq: a tool for determining the threshold in short RNA-seq datasets
por: Magee, Rogan, et al.
Publicado: (2017)

Protocol for a Korean Multicenter Prospective Cohort Study of Active Surveillance or Surgery (KoMPASS) in Papillary Thyroid Microcarcinoma
por: Jeon, Min Ji, et al.
Publicado: (2022)

Protocol for a Korean Multicenter Prospective Cohort Study of Active Surveillance or Surgery (KoMPASS) in Papillary Thyroid Microcarcinoma
por: Jeon, Min Ji, et al.
Publicado: (2021)

Transcriptomic landscape of the interaction between the entomopathogenic fungus Beauveria bassiana and its tolerant host Tribolium castaneum revealed by dual RNA-seq
por: Mannino, María Constanza, et al.
Publicado: (2023)

dRNASb: a systems biology approach to decipher dynamics of host–pathogen interactions using temporal dual RNA-seq data
por: Dinarvand, Mojdeh, et al.
Publicado: (2022)

Uncovering the Complexity of Transcriptomes with RNA-Seq
por: Costa, Valerio, et al.
Publicado: (2010)

Dataset of RNA-Seq transcriptome of the fetal liver at day 83 of gestation associated with periconceptual maternal nutrition in beef heifers
por: Diniz, Wellison J.S., et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_83612qtm6ot04k5lmjjf2iqhqk