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Whole transcriptome organisation in the dehydrated supraoptic nucleus

The supraoptic nucleus (SON) is part of the central osmotic circuitry that synthesises the hormone vasopressin (Avp) and transports it to terminals in the posterior lobe of the pituitary. Following osmotic stress such as dehydration, this tissue undergoes morphological, electrical and transcriptiona...

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Autores principales: Hindmarch, C.C.T., Franses, P., Goodwin, B., Murphy, D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Associação Brasileira de Divulgação Científica 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3935270/
https://www.ncbi.nlm.nih.gov/pubmed/24345907
http://dx.doi.org/10.1590/1414-431X20133328
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author Hindmarch, C.C.T.
Franses, P.
Goodwin, B.
Murphy, D.
author_facet Hindmarch, C.C.T.
Franses, P.
Goodwin, B.
Murphy, D.
author_sort Hindmarch, C.C.T.
collection PubMed
description The supraoptic nucleus (SON) is part of the central osmotic circuitry that synthesises the hormone vasopressin (Avp) and transports it to terminals in the posterior lobe of the pituitary. Following osmotic stress such as dehydration, this tissue undergoes morphological, electrical and transcriptional changes to facilitate the appropriate regulation and release of Avp into the circulation where it conserves water at the level of the kidney. Here, the organisation of the whole transcriptome following dehydration is modelled to fit Zipf's law, a natural power law that holds true for all natural languages, that states if the frequency of word usage is plotted against its rank, then the log linear regression of this is -1. We have applied this model to our previously published euhydrated and dehydrated SON data to observe this trend and how it changes following dehydration. In accordance with other studies, our whole transcriptome data fit well with this model in the euhydrated SON microarrays, but interestingly, fit better in the dehydrated arrays. This trend was observed in a subset of differentially regulated genes and also following network reconstruction using a third-party database that mines public data. We make use of language as a metaphor that helps us philosophise about the role of the whole transcriptome in providing a suitable environment for the delivery of Avp following a survival threat like dehydration.
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spelling pubmed-39352702014-03-07 Whole transcriptome organisation in the dehydrated supraoptic nucleus Hindmarch, C.C.T. Franses, P. Goodwin, B. Murphy, D. Braz J Med Biol Res Reviews The supraoptic nucleus (SON) is part of the central osmotic circuitry that synthesises the hormone vasopressin (Avp) and transports it to terminals in the posterior lobe of the pituitary. Following osmotic stress such as dehydration, this tissue undergoes morphological, electrical and transcriptional changes to facilitate the appropriate regulation and release of Avp into the circulation where it conserves water at the level of the kidney. Here, the organisation of the whole transcriptome following dehydration is modelled to fit Zipf's law, a natural power law that holds true for all natural languages, that states if the frequency of word usage is plotted against its rank, then the log linear regression of this is -1. We have applied this model to our previously published euhydrated and dehydrated SON data to observe this trend and how it changes following dehydration. In accordance with other studies, our whole transcriptome data fit well with this model in the euhydrated SON microarrays, but interestingly, fit better in the dehydrated arrays. This trend was observed in a subset of differentially regulated genes and also following network reconstruction using a third-party database that mines public data. We make use of language as a metaphor that helps us philosophise about the role of the whole transcriptome in providing a suitable environment for the delivery of Avp following a survival threat like dehydration. Associação Brasileira de Divulgação Científica 2013-12-02 /pmc/articles/PMC3935270/ /pubmed/24345907 http://dx.doi.org/10.1590/1414-431X20133328 Text en http://creativecommons.org/licenses/by-nc/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License, which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Reviews
Hindmarch, C.C.T.
Franses, P.
Goodwin, B.
Murphy, D.
Whole transcriptome organisation in the dehydrated supraoptic nucleus
title Whole transcriptome organisation in the dehydrated supraoptic nucleus
title_full Whole transcriptome organisation in the dehydrated supraoptic nucleus
title_fullStr Whole transcriptome organisation in the dehydrated supraoptic nucleus
title_full_unstemmed Whole transcriptome organisation in the dehydrated supraoptic nucleus
title_short Whole transcriptome organisation in the dehydrated supraoptic nucleus
title_sort whole transcriptome organisation in the dehydrated supraoptic nucleus
topic Reviews
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3935270/
https://www.ncbi.nlm.nih.gov/pubmed/24345907
http://dx.doi.org/10.1590/1414-431X20133328
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