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Inferences about population dynamics from count data using multistate models: a comparison to capture–recapture approaches

Wildlife populations consist of individuals that contribute disproportionately to growth and viability. Understanding a population's spatial and temporal dynamics requires estimates of abundance and demographic rates that account for this heterogeneity. Estimating these quantities can be diffic...

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Autores principales: Zipkin, Elise F, Sillett, T Scott, Grant, Evan H Campbell, Chandler, Richard B, Royle, J Andrew
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley & Sons Ltd 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3936388/
https://www.ncbi.nlm.nih.gov/pubmed/24634726
http://dx.doi.org/10.1002/ece3.942
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author Zipkin, Elise F
Sillett, T Scott
Grant, Evan H Campbell
Chandler, Richard B
Royle, J Andrew
author_facet Zipkin, Elise F
Sillett, T Scott
Grant, Evan H Campbell
Chandler, Richard B
Royle, J Andrew
author_sort Zipkin, Elise F
collection PubMed
description Wildlife populations consist of individuals that contribute disproportionately to growth and viability. Understanding a population's spatial and temporal dynamics requires estimates of abundance and demographic rates that account for this heterogeneity. Estimating these quantities can be difficult, requiring years of intensive data collection. Often, this is accomplished through the capture and recapture of individual animals, which is generally only feasible at a limited number of locations. In contrast, N-mixture models allow for the estimation of abundance, and spatial variation in abundance, from count data alone. We extend recently developed multistate, open population N-mixture models, which can additionally estimate demographic rates based on an organism's life history characteristics. In our extension, we develop an approach to account for the case where not all individuals can be assigned to a state during sampling. Using only state-specific count data, we show how our model can be used to estimate local population abundance, as well as density-dependent recruitment rates and state-specific survival. We apply our model to a population of black-throated blue warblers (Setophaga caerulescens) that have been surveyed for 25 years on their breeding grounds at the Hubbard Brook Experimental Forest in New Hampshire, USA. The intensive data collection efforts allow us to compare our estimates to estimates derived from capture–recapture data. Our model performed well in estimating population abundance and density-dependent rates of annual recruitment/immigration. Estimates of local carrying capacity and per capita recruitment of yearlings were consistent with those published in other studies. However, our model moderately underestimated annual survival probability of yearling and adult females and severely underestimates survival probabilities for both of these male stages. The most accurate and precise estimates will necessarily require some amount of intensive data collection efforts (such as capture–recapture). Integrated population models that combine data from both intensive and extensive sources are likely to be the most efficient approach for estimating demographic rates at large spatial and temporal scales.
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spelling pubmed-39363882014-03-14 Inferences about population dynamics from count data using multistate models: a comparison to capture–recapture approaches Zipkin, Elise F Sillett, T Scott Grant, Evan H Campbell Chandler, Richard B Royle, J Andrew Ecol Evol Original Research Wildlife populations consist of individuals that contribute disproportionately to growth and viability. Understanding a population's spatial and temporal dynamics requires estimates of abundance and demographic rates that account for this heterogeneity. Estimating these quantities can be difficult, requiring years of intensive data collection. Often, this is accomplished through the capture and recapture of individual animals, which is generally only feasible at a limited number of locations. In contrast, N-mixture models allow for the estimation of abundance, and spatial variation in abundance, from count data alone. We extend recently developed multistate, open population N-mixture models, which can additionally estimate demographic rates based on an organism's life history characteristics. In our extension, we develop an approach to account for the case where not all individuals can be assigned to a state during sampling. Using only state-specific count data, we show how our model can be used to estimate local population abundance, as well as density-dependent recruitment rates and state-specific survival. We apply our model to a population of black-throated blue warblers (Setophaga caerulescens) that have been surveyed for 25 years on their breeding grounds at the Hubbard Brook Experimental Forest in New Hampshire, USA. The intensive data collection efforts allow us to compare our estimates to estimates derived from capture–recapture data. Our model performed well in estimating population abundance and density-dependent rates of annual recruitment/immigration. Estimates of local carrying capacity and per capita recruitment of yearlings were consistent with those published in other studies. However, our model moderately underestimated annual survival probability of yearling and adult females and severely underestimates survival probabilities for both of these male stages. The most accurate and precise estimates will necessarily require some amount of intensive data collection efforts (such as capture–recapture). Integrated population models that combine data from both intensive and extensive sources are likely to be the most efficient approach for estimating demographic rates at large spatial and temporal scales. John Wiley & Sons Ltd 2014-02 2014-01-20 /pmc/articles/PMC3936388/ /pubmed/24634726 http://dx.doi.org/10.1002/ece3.942 Text en © 2014 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. http://creativecommons.org/licenses/by/3.0/ This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Zipkin, Elise F
Sillett, T Scott
Grant, Evan H Campbell
Chandler, Richard B
Royle, J Andrew
Inferences about population dynamics from count data using multistate models: a comparison to capture–recapture approaches
title Inferences about population dynamics from count data using multistate models: a comparison to capture–recapture approaches
title_full Inferences about population dynamics from count data using multistate models: a comparison to capture–recapture approaches
title_fullStr Inferences about population dynamics from count data using multistate models: a comparison to capture–recapture approaches
title_full_unstemmed Inferences about population dynamics from count data using multistate models: a comparison to capture–recapture approaches
title_short Inferences about population dynamics from count data using multistate models: a comparison to capture–recapture approaches
title_sort inferences about population dynamics from count data using multistate models: a comparison to capture–recapture approaches
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3936388/
https://www.ncbi.nlm.nih.gov/pubmed/24634726
http://dx.doi.org/10.1002/ece3.942
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