Cargando…

SIGI: score-based identification of genomic islands

BACKGROUND: Genomic islands can be observed in many microbial genomes. These stretches of DNA have a conspicuous composition with regard to sequence or encoded functions. Genomic islands are assumed to be frequently acquired via horizontal gene transfer. For the analysis of genome structure and the...

Descripción completa

Detalles Bibliográficos
Autor principal:	Merkl, Rainer
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2004
Materias:	Methodology Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC394314/ https://www.ncbi.nlm.nih.gov/pubmed/15113412 http://dx.doi.org/10.1186/1471-2105-5-22

Ejemplares similares

SIGI, an integrated scientometric and curricular information system for teaching-research institutions
por: Sierra Flores, María Magdalena, et al.
Publicado: (2021)

H2r: Identification of evolutionary important residues by means of an entropy based analysis of multiple sequence alignments
por: Merkl, Rainer, et al.
Publicado: (2008)

Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models
por: Waack, Stephan, et al.
Publicado: (2006)

AGeNNT: annotation of enzyme families by means of refined neighborhood networks
por: Kandlinger, Florian, et al.
Publicado: (2017)

Identifying genomic islands with deep neural networks
por: Assaf, Rida, et al.
Publicado: (2021)

Oligo kernels for datamining on biological sequences: a case study on prokaryotic translation initiation sites
por: Meinicke, Peter, et al.
Publicado: (2004)

Island method for estimating the statistical significance of profile-profile alignment scores
por: Poleksic, Aleksandar
Publicado: (2009)

On detection and assessment of statistical significance of Genomic Islands
por: Chatterjee, Raghunath, et al.
Publicado: (2008)

H2rs: Deducing evolutionary and functionally important residue positions by means of an entropy and similarity based analysis of multiple sequence alignments
por: Janda, Jan-Oliver, et al.
Publicado: (2014)

TransCent: Computational enzyme design by transferring active sites and considering constraints relevant for catalysis
por: Fischer, André, et al.
Publicado: (2009)

A computational approach for identifying pathogenicity islands in prokaryotic genomes
por: Yoon, Sung Ho, et al.
Publicado: (2005)

Robust and rigorous identification of tissue-specific genes by statistically extending tau score
por: Lüleci, Hatice Büşra, et al.
Publicado: (2022)

GO4genome: A Prokaryotic Phylogeny Based on Genome Organization
por: Merkl, Rainer, et al.
Publicado: (2009)

Network-based scoring system for genome-scale metabolic reconstructions
por: Serrano, M Ángeles, et al.
Publicado: (2011)

Accelerating the scoring module of mass spectrometry-based peptide identification using GPUs
por: Li, You, et al.
Publicado: (2014)

Training competent and effective Primary Health Care Workers to fill a void in the outer islands health service delivery of the Marshall Islands of Micronesia
por: Keni, Bhalachandra H
Publicado: (2006)

MIRA-seq for DNA methylation analysis of CpG islands
por: Jung, Marc, et al.
Publicado: (2015)

Detection of CRISPR-mediated genome modifications through altered methylation patterns of CpG islands
por: Farris, M. Heath, et al.
Publicado: (2020)

Properties of GPS noise at Japan islands before and after Tohoku mega-earthquake
por: Lyubushin, Alexey, et al.
Publicado: (2014)

Mapping and enumerating houses and households to support malaria control interventions on Bioko Island
por: García, Guillermo A., et al.
Publicado: (2019)

De novo identification of differentially methylated regions in the human genome
por: Peters, Timothy J, et al.
Publicado: (2015)

Near-real-time estimation of fossil fuel CO(2) emissions from China based on atmospheric observations on Hateruma and Yonaguni Islands, Japan
por: Tohjima, Yasunori, et al.
Publicado: (2023)

Identification of Medium-Sized Copy Number Alterations in Whole-Genome Sequencing
por: Ozer, Hatice Gulcin, et al.
Publicado: (2015)

An evaluation of LSU rDNA D1-D2 sequences for their use in species identification
por: Sonnenberg, Rainer, et al.
Publicado: (2007)

Optimized reduced representation bisulfite sequencing reveals tissue-specific mCHH islands in maize
por: Hsu, Fei-Man, et al.
Publicado: (2017)

2SigFinder: the combined use of small-scale and large-scale statistical testing for genomic island detection from a single genome
por: Kong, Rui, et al.
Publicado: (2020)

The correlation between baseline score and post-intervention score, and its implications for statistical analysis
por: Clifton, Lei, et al.
Publicado: (2019)

A feature selection method for classification within functional genomics experiments based on the proportional overlapping score
por: Mahmoud, Osama, et al.
Publicado: (2014)

Identification of yeast cell cycle regulated genes based on genomic features
por: Cheng, Chao, et al.
Publicado: (2013)

Flexible and efficient genome tiling design with penalized uniqueness score
por: Du, Yang, et al.
Publicado: (2012)

Targeted identification of TE insertions in a Drosophila genome through hemi-specific PCR
por: Zhang, Shuo, et al.
Publicado: (2017)

Large scale genome skimming from herbarium material for accurate plant identification and phylogenomics
por: Nevill, Paul G., et al.
Publicado: (2020)

Genome-wide identification of significant aberrations in cancer genome
por: Yuan, Xiguo, et al.
Publicado: (2012)

Including the urban heat island in spatial heat health risk assessment strategies: a case study for Birmingham, UK
por: Tomlinson, Charlie J, et al.
Publicado: (2011)

Customized epithelial debridement for thin ectatic corneas undergoing corneal cross-linking: epithelial island cross-linking technique
por: Mazzotta, Cosimo, et al.
Publicado: (2014)

Genome-wide identification of microsatellites in white clover (Trifolium repens L.) using FIASCO and phpSSRMiner
por: Zhang, Yan, et al.
Publicado: (2008)

Identification of somatic mutations in cancer through Bayesian-based analysis of sequenced genome pairs
por: Christoforides, Alexis, et al.
Publicado: (2013)

Antimicrobial resistance genetic factor identification from whole-genome sequence data using deep feature selection
por: Shi, Jinhong, et al.
Publicado: (2019)

Identification of fish species through tRNA-based primer design
por: Wu, Ting-Hui, et al.
Publicado: (2022)

Endoscopy-based IBD identification by a quantized deep learning pipeline
por: Datres, Massimiliano, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_v16ar2ddqhd7698eg3s93unoco