Cargando…

Energetic analysis of the R*-G complex links the α5 helix to GDP release and domain opening

We present a model of interaction of G(i) protein with activated rhodopsin (R*) which pin-points energetic contributions to activation and reconciles the β(2)AR–G(s) crystal structure with new and previously published experimental data. In silico analysis demonstrated energetic changes when the Gα C...

Descripción completa

Detalles Bibliográficos
Autores principales: Alexander, Nathan S., Preininger, Anita M., Kaya, Ali I., Stein, Richard A., Hamm, Heidi E., Meiler, Jens
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3947367/
https://www.ncbi.nlm.nih.gov/pubmed/24292645
http://dx.doi.org/10.1038/nsmb.2705
_version_ 1782306698616111104
author Alexander, Nathan S.
Preininger, Anita M.
Kaya, Ali I.
Stein, Richard A.
Hamm, Heidi E.
Meiler, Jens
author_facet Alexander, Nathan S.
Preininger, Anita M.
Kaya, Ali I.
Stein, Richard A.
Hamm, Heidi E.
Meiler, Jens
author_sort Alexander, Nathan S.
collection PubMed
description We present a model of interaction of G(i) protein with activated rhodopsin (R*) which pin-points energetic contributions to activation and reconciles the β(2)AR–G(s) crystal structure with new and previously published experimental data. In silico analysis demonstrated energetic changes when the Gα C-terminal helix (α5) interacts with the R* cytoplasmic pocket, leading to displacement of the helical domain and GDP release. The model features a less dramatic domain opening than the crystal structure. The α5 helix undergoes a 63º rotation, accompanied by a 5.7Å translation, which reorganizes interfaces between α5 and α1 helices and between α5 and β6–α5. Changes in the β6–α5 loop displace αG. All of these movements lead to opening of the GDP binding pocket. The model creates a roadmap for experimental studies of receptormediated G protein activation.
format Online
Article
Text
id pubmed-3947367
institution National Center for Biotechnology Information
language English
publishDate 2013
record_format MEDLINE/PubMed
spelling pubmed-39473672014-07-01 Energetic analysis of the R*-G complex links the α5 helix to GDP release and domain opening Alexander, Nathan S. Preininger, Anita M. Kaya, Ali I. Stein, Richard A. Hamm, Heidi E. Meiler, Jens Nat Struct Mol Biol Article We present a model of interaction of G(i) protein with activated rhodopsin (R*) which pin-points energetic contributions to activation and reconciles the β(2)AR–G(s) crystal structure with new and previously published experimental data. In silico analysis demonstrated energetic changes when the Gα C-terminal helix (α5) interacts with the R* cytoplasmic pocket, leading to displacement of the helical domain and GDP release. The model features a less dramatic domain opening than the crystal structure. The α5 helix undergoes a 63º rotation, accompanied by a 5.7Å translation, which reorganizes interfaces between α5 and α1 helices and between α5 and β6–α5. Changes in the β6–α5 loop displace αG. All of these movements lead to opening of the GDP binding pocket. The model creates a roadmap for experimental studies of receptormediated G protein activation. 2013-12-01 2014-01 /pmc/articles/PMC3947367/ /pubmed/24292645 http://dx.doi.org/10.1038/nsmb.2705 Text en Users may view, print, copy, download and text and data- mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use: http://www.nature.com/authors/editorial_policies/license.html#terms
spellingShingle Article
Alexander, Nathan S.
Preininger, Anita M.
Kaya, Ali I.
Stein, Richard A.
Hamm, Heidi E.
Meiler, Jens
Energetic analysis of the R*-G complex links the α5 helix to GDP release and domain opening
title Energetic analysis of the R*-G complex links the α5 helix to GDP release and domain opening
title_full Energetic analysis of the R*-G complex links the α5 helix to GDP release and domain opening
title_fullStr Energetic analysis of the R*-G complex links the α5 helix to GDP release and domain opening
title_full_unstemmed Energetic analysis of the R*-G complex links the α5 helix to GDP release and domain opening
title_short Energetic analysis of the R*-G complex links the α5 helix to GDP release and domain opening
title_sort energetic analysis of the r*-g complex links the α5 helix to gdp release and domain opening
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3947367/
https://www.ncbi.nlm.nih.gov/pubmed/24292645
http://dx.doi.org/10.1038/nsmb.2705
work_keys_str_mv AT alexandernathans energeticanalysisofthergcomplexlinksthea5helixtogdpreleaseanddomainopening
AT preiningeranitam energeticanalysisofthergcomplexlinksthea5helixtogdpreleaseanddomainopening
AT kayaalii energeticanalysisofthergcomplexlinksthea5helixtogdpreleaseanddomainopening
AT steinricharda energeticanalysisofthergcomplexlinksthea5helixtogdpreleaseanddomainopening
AT hammheidie energeticanalysisofthergcomplexlinksthea5helixtogdpreleaseanddomainopening
AT meilerjens energeticanalysisofthergcomplexlinksthea5helixtogdpreleaseanddomainopening