Cargando…

Global Patterns of Abundance, Diversity and Community Structure of the Aminicenantes (Candidate Phylum OP8)

We investigated the global patterns of abundance, diversity, and community structure of members of the Aminicenantes (candidate phylum OP8). Our aim was to identify the putative ecological role(s) played by members of this poorly characterized bacterial lineages in various ecosystems. Analysis of ne...

Descripción completa

Detalles Bibliográficos
Autores principales: Farag, Ibrahim F., Davis, James P., Youssef, Noha H., Elshahed, Mostafa S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3956909/
https://www.ncbi.nlm.nih.gov/pubmed/24637619
http://dx.doi.org/10.1371/journal.pone.0092139
_version_ 1782307730804965376
author Farag, Ibrahim F.
Davis, James P.
Youssef, Noha H.
Elshahed, Mostafa S.
author_facet Farag, Ibrahim F.
Davis, James P.
Youssef, Noha H.
Elshahed, Mostafa S.
author_sort Farag, Ibrahim F.
collection PubMed
description We investigated the global patterns of abundance, diversity, and community structure of members of the Aminicenantes (candidate phylum OP8). Our aim was to identify the putative ecological role(s) played by members of this poorly characterized bacterial lineages in various ecosystems. Analysis of near full-length 16S rRNA genes identified four classes and eight orders within the Aminicenantes. Within 3,134 datasets comprising ∼1.8 billion high throughput-generated partial 16S rRNA genes, 47,351 Aminicenantes-affiliated sequences were identified in 913 datasets. The Aminicenantes exhibited the highest relative abundance in hydrocarbon-impacted environments, followed by marine habitats (especially hydrothermal vents and coral-associated microbiome samples), and aquatic, non-marine habitats (especially in terrestrial springs and groundwater samples). While the overall abundance of the Aminicenantes was higher in low oxygen tension as well as non-saline and low salinity habitats, it was encountered in a wide range of oxygen tension, salinities, and temperatures. Analysis of the community structure of the Aminicenantes showed distinct patterns across various datasets that appear to be, mostly, driven by habitat variations rather than prevalent environmental parameters. We argue that the detection of the Aminicenantes across environmental extremes and the observed distinct community structure patterns reflect a high level of intraphylum metabolic diversity and adaptive capabilities that enable its survival and growth in a wide range of habitats and environmental conditions.
format Online
Article
Text
id pubmed-3956909
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-39569092014-03-18 Global Patterns of Abundance, Diversity and Community Structure of the Aminicenantes (Candidate Phylum OP8) Farag, Ibrahim F. Davis, James P. Youssef, Noha H. Elshahed, Mostafa S. PLoS One Research Article We investigated the global patterns of abundance, diversity, and community structure of members of the Aminicenantes (candidate phylum OP8). Our aim was to identify the putative ecological role(s) played by members of this poorly characterized bacterial lineages in various ecosystems. Analysis of near full-length 16S rRNA genes identified four classes and eight orders within the Aminicenantes. Within 3,134 datasets comprising ∼1.8 billion high throughput-generated partial 16S rRNA genes, 47,351 Aminicenantes-affiliated sequences were identified in 913 datasets. The Aminicenantes exhibited the highest relative abundance in hydrocarbon-impacted environments, followed by marine habitats (especially hydrothermal vents and coral-associated microbiome samples), and aquatic, non-marine habitats (especially in terrestrial springs and groundwater samples). While the overall abundance of the Aminicenantes was higher in low oxygen tension as well as non-saline and low salinity habitats, it was encountered in a wide range of oxygen tension, salinities, and temperatures. Analysis of the community structure of the Aminicenantes showed distinct patterns across various datasets that appear to be, mostly, driven by habitat variations rather than prevalent environmental parameters. We argue that the detection of the Aminicenantes across environmental extremes and the observed distinct community structure patterns reflect a high level of intraphylum metabolic diversity and adaptive capabilities that enable its survival and growth in a wide range of habitats and environmental conditions. Public Library of Science 2014-03-17 /pmc/articles/PMC3956909/ /pubmed/24637619 http://dx.doi.org/10.1371/journal.pone.0092139 Text en © 2014 Farag et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Farag, Ibrahim F.
Davis, James P.
Youssef, Noha H.
Elshahed, Mostafa S.
Global Patterns of Abundance, Diversity and Community Structure of the Aminicenantes (Candidate Phylum OP8)
title Global Patterns of Abundance, Diversity and Community Structure of the Aminicenantes (Candidate Phylum OP8)
title_full Global Patterns of Abundance, Diversity and Community Structure of the Aminicenantes (Candidate Phylum OP8)
title_fullStr Global Patterns of Abundance, Diversity and Community Structure of the Aminicenantes (Candidate Phylum OP8)
title_full_unstemmed Global Patterns of Abundance, Diversity and Community Structure of the Aminicenantes (Candidate Phylum OP8)
title_short Global Patterns of Abundance, Diversity and Community Structure of the Aminicenantes (Candidate Phylum OP8)
title_sort global patterns of abundance, diversity and community structure of the aminicenantes (candidate phylum op8)
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3956909/
https://www.ncbi.nlm.nih.gov/pubmed/24637619
http://dx.doi.org/10.1371/journal.pone.0092139
work_keys_str_mv AT faragibrahimf globalpatternsofabundancediversityandcommunitystructureoftheaminicenantescandidatephylumop8
AT davisjamesp globalpatternsofabundancediversityandcommunitystructureoftheaminicenantescandidatephylumop8
AT youssefnohah globalpatternsofabundancediversityandcommunitystructureoftheaminicenantescandidatephylumop8
AT elshahedmostafas globalpatternsofabundancediversityandcommunitystructureoftheaminicenantescandidatephylumop8