Versatile and open software for comparing large genomes

The newest version of MUMmer easily handles comparisons of large eukaryotic genomes at varying evolutionary distances, as demonstrated by applications to multiple genomes. Two new graphical viewing tools provide alternative ways to analyze genome alignments. The new system is the first version of MU...

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Detalles Bibliográficos
Autores principales: Kurtz, Stefan, Phillippy, Adam, Delcher, Arthur L, Smoot, Michael, Shumway, Martin, Antonescu, Corina, Salzberg, Steven L
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2004
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC395750/
https://www.ncbi.nlm.nih.gov/pubmed/14759262
http://dx.doi.org/10.1186/gb-2004-5-2-r12
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author Kurtz, Stefan
Phillippy, Adam
Delcher, Arthur L
Smoot, Michael
Shumway, Martin
Antonescu, Corina
Salzberg, Steven L
author_facet Kurtz, Stefan
Phillippy, Adam
Delcher, Arthur L
Smoot, Michael
Shumway, Martin
Antonescu, Corina
Salzberg, Steven L
author_sort Kurtz, Stefan
collection PubMed
description The newest version of MUMmer easily handles comparisons of large eukaryotic genomes at varying evolutionary distances, as demonstrated by applications to multiple genomes. Two new graphical viewing tools provide alternative ways to analyze genome alignments. The new system is the first version of MUMmer to be released as open-source software. This allows other developers to contribute to the code base and freely redistribute the code. The MUMmer sources are available at .
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spelling pubmed-3957502004-04-24 Versatile and open software for comparing large genomes Kurtz, Stefan Phillippy, Adam Delcher, Arthur L Smoot, Michael Shumway, Martin Antonescu, Corina Salzberg, Steven L Genome Biol Software The newest version of MUMmer easily handles comparisons of large eukaryotic genomes at varying evolutionary distances, as demonstrated by applications to multiple genomes. Two new graphical viewing tools provide alternative ways to analyze genome alignments. The new system is the first version of MUMmer to be released as open-source software. This allows other developers to contribute to the code base and freely redistribute the code. The MUMmer sources are available at . BioMed Central 2004 2004-01-30 /pmc/articles/PMC395750/ /pubmed/14759262 http://dx.doi.org/10.1186/gb-2004-5-2-r12 Text en Copyright © 2004 Kurtz et al.; licensee BioMed Central Ltd. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose, provided this notice is preserved along with the article's original URL.
spellingShingle Software
Kurtz, Stefan
Phillippy, Adam
Delcher, Arthur L
Smoot, Michael
Shumway, Martin
Antonescu, Corina
Salzberg, Steven L
Versatile and open software for comparing large genomes
title Versatile and open software for comparing large genomes
title_full Versatile and open software for comparing large genomes
title_fullStr Versatile and open software for comparing large genomes
title_full_unstemmed Versatile and open software for comparing large genomes
title_short Versatile and open software for comparing large genomes
title_sort versatile and open software for comparing large genomes
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC395750/
https://www.ncbi.nlm.nih.gov/pubmed/14759262
http://dx.doi.org/10.1186/gb-2004-5-2-r12
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AT smootmichael versatileandopensoftwareforcomparinglargegenomes
AT shumwaymartin versatileandopensoftwareforcomparinglargegenomes
AT antonescucorina versatileandopensoftwareforcomparinglargegenomes
AT salzbergstevenl versatileandopensoftwareforcomparinglargegenomes

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