Cargando…

Towards a Computational Model of a Methane Producing Archaeum

Progress towards a complete model of the methanogenic archaeum Methanosarcina acetivorans is reported. We characterized size distribution of the cells using differential interference contrast microscopy, finding them to be ellipsoidal with mean length and width of 2.9 μm and 2.3 μm, respectively, wh...

Descripción completa

Detalles Bibliográficos
Autores principales:	Peterson, Joseph R., Labhsetwar, Piyush, Ellermeier, Jeremy R., Kohler, Petra R. A., Jain, Ankur, Ha, Taekjip, Metcalf, William W., Luthey-Schulten, Zaida
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Hindawi Publishing Corporation 2014
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3960522/ https://www.ncbi.nlm.nih.gov/pubmed/24729742 http://dx.doi.org/10.1155/2014/898453

Ejemplares similares

Population FBA predicts metabolic phenotypes in yeast
por: Labhsetwar, Piyush, et al.
Publicado: (2017)

Genome-wide gene expression and RNA half-life measurements allow predictions of regulation and metabolic behavior in Methanosarcina acetivorans
por: Peterson, Joseph R., et al.
Publicado: (2016)

Effects of individual base-pairs on in vivo target search and destruction kinetics of bacterial small RNA
por: Poddar, Anustup, et al.
Publicado: (2021)

Genome-Scale Metabolic Modeling of Archaea Lends Insight into Diversity of Metabolic Function
por: Thor, ShengShee, et al.
Publicado: (2017)

Correction: Parametric studies of metabolic cooperativity in Escherichia coli colonies: Strain and geometric confinement effects
por: Peterson, Joseph R., et al.
Publicado: (2017)

Parametric studies of metabolic cooperativity in Escherichia coli colonies: Strain and geometric confinement effects
por: Peterson, Joseph R., et al.
Publicado: (2017)

An in-silico human cell model reveals the influence of spatial organization on RNA splicing
por: Ghaemi, Zhaleh, et al.
Publicado: (2020)

Stochastic Analysis Demonstrates the Dual Role of Hfq in Chaperoning E. coli Sugar Shock Response
por: Bianchi, David M., et al.
Publicado: (2020)

Spatially-resolved metabolic cooperativity within dense bacterial colonies
por: Cole, John A, et al.
Publicado: (2015)

Protein-guided RNA dynamics during early ribosome assembly
por: Kim, Hajin, et al.
Publicado: (2014)

Evolution of protein-coupled RNA dynamics during hierarchical assembly of ribosomal complexes
por: Abeysirigunawardena, Sanjaya C., et al.
Publicado: (2017)

Free-energy simulations reveal molecular mechanism for functional switch of a DNA helicase
por: Ma, Wen, et al.
Publicado: (2018)

Horizontal gene transfer of zinc and non-zinc forms of bacterial ribosomal protein S4
por: Chen, Ke, et al.
Publicado: (2009)

Hybrid CME–ODE method for efficient simulation of the galactose switch in yeast
por: Bianchi, David M., et al.
Publicado: (2018)

Toward the Complete Functional Characterization of a Minimal Bacterial Proteome
por: Bianchi, David M., et al.
Publicado: (2022)

MultiSeq: unifying sequence and structure data for evolutionary analysis
por: Roberts, Elijah, et al.
Publicado: (2006)

The thiolation of uridine 34 in tRNA, which controls protein translation, depends on a [4Fe-4S] cluster in the archaeum Methanococcus maripaludis
por: Bimai, Ornella, et al.
Publicado: (2023)

Essential metabolism for a minimal cell
por: Breuer, Marian, et al.
Publicado: (2019)

Noise Contributions in an Inducible Genetic Switch: A Whole-Cell Simulation Study
por: Roberts, Elijah, et al.
Publicado: (2011)

In Situ Conformational Changes of the Escherichia coli Serine Chemoreceptor in Different Signaling States
por: Yang, Wen, et al.
Publicado: (2019)

Kinetic and structural mechanism for DNA unwinding by a non-hexameric helicase
por: Carney, Sean P., et al.
Publicado: (2021)

Generating Chromosome Geometries in a Minimal Cell From Cryo-Electron Tomograms and Chromosome Conformation Capture Maps
por: Gilbert, Benjamin R., et al.
Publicado: (2021)

Dynamics of chromosome organization in a minimal bacterial cell
por: Gilbert, Benjamin R., et al.
Publicado: (2023)

Dynamics of Major Histocompatibility Complex Class I Association with the Human Peptide-loading Complex
por: Panter, Michaela S., et al.
Publicado: (2012)

Molecular dynamics simulation of an entire cell
por: Stevens, Jan A., et al.
Publicado: (2023)

Structure and dynamics of the E. coli chemotaxis core signaling complex by cryo-electron tomography and molecular simulations
por: Cassidy, C. Keith, et al.
Publicado: (2020)

Kinetic Modeling of the Genetic Information Processes in a Minimal Cell
por: Thornburg, Zane R., et al.
Publicado: (2019)

Aquatic and terrestrial cyanobacteria produce methane
por: Bižić, M., et al.
Publicado: (2020)

NAMD goes quantum: An integrative suite for QM/MM simulations
por: Melo, Marcelo C. R., et al.
Publicado: (2018)

FACTORS INFLUENCING PULMONARY METHANE EXCRETION IN MAN : AN INDIRECT METHOD OF STUDYING THE IN SITU METABOLISM OF THE METHANE-PRODUCING COLONIC BACTERIA
por: Bond, John H., et al.
Publicado: (1971)

Mechanisms of Nanonewton Mechanostability in a Protein Complex Revealed by Molecular Dynamics Simulations and Single-Molecule Force Spectroscopy
por: Bernardi, Rafael C., et al.
Publicado: (2019)

Methanogens: Methane Producers of the Rumen and Mitigation Strategies
por: Hook, Sarah E., et al.
Publicado: (2010)

Genetic manipulation of Methanosarcina spp.
por: Kohler, Petra R. A., et al.
Publicado: (2012)

BuGZ exhibits guanine nucleotide exchange factor activity toward tubulin
por: Yon, Wesley J., et al.
Publicado: (2023)

Aeolian abrasion of rocks as a mechanism to produce methane in the Martian atmosphere
por: Safi, E., et al.
Publicado: (2019)

Complete structure of the chemosensory array core signalling unit in an E. coli minicell strain
por: Burt, Alister, et al.
Publicado: (2020)

Twin-arginine translocation (Tat) mutants in Salmonella enterica serovar Typhimurium have increased susceptibility to cell wall targeting antibiotics
por: M Brauer, Adrienne, et al.
Publicado: (2021)

Tris(methylthio)methane produced by Mortierella hyalina affects sulfur homeostasis in Arabidopsis
por: Tseng, Y.-H., et al.
Publicado: (2022)

Toward a statistical description of methane emissions from arctic wetlands
por: Pirk, Norbert, et al.
Publicado: (2017)

Envelope Stress Activates Expression of the Twin Arginine Translocation (Tat) System in Salmonella
por: Rogers, Alexandra R., et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_0sb85m62b93d537bqs79jqsopn