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Inverted Topologies in Membrane Proteins: A Mini-Review

Helical membrane proteins such as transporters, receptors, or channels often exhibit structural symmetry. Symmetry is perfect in homo-oligomers consisting of two or more copies of the same protein chain. Intriguingly, in single chain membrane proteins, often internal pseudo-symmetry is observed, in...

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Autores principales: Duran, Amanda M, Meiler, Jens
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Research Network of Computational and Structural Biotechnology (RNCSB) Organization 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3962082/
https://www.ncbi.nlm.nih.gov/pubmed/24688744
http://dx.doi.org/10.5936/csbj.201308004
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author Duran, Amanda M
Meiler, Jens
author_facet Duran, Amanda M
Meiler, Jens
author_sort Duran, Amanda M
collection PubMed
description Helical membrane proteins such as transporters, receptors, or channels often exhibit structural symmetry. Symmetry is perfect in homo-oligomers consisting of two or more copies of the same protein chain. Intriguingly, in single chain membrane proteins, often internal pseudo-symmetry is observed, in particular in transporters and channels. In several cases single chain proteins with pseudo-symmetry exist, that share the fold with homo-oligomers suggesting evolutionary pathways that involve gene duplication and fusion. It has been hypothesized that such evolutionary pathways allow for the rapid development of large proteins with novel functionality. At the same time symmetry can be leveraged to recognize highly symmetric substrates such as ions. Here we review helical transporter proteins with an inverted two-fold pseudo-symmetry. In this special scenario the symmetry axis lies in the membrane plane. As a result, the putative ancestral monomeric protein would insert in both directions into the membrane and its open-to-the-inside and open-to-the-outside conformations would be structurally identical and iso-energetic, giving a possible evolutionary pathway to create a transporter protein that needs to flip between the two states.
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spelling pubmed-39620822014-03-31 Inverted Topologies in Membrane Proteins: A Mini-Review Duran, Amanda M Meiler, Jens Comput Struct Biotechnol J Mini Reviews Helical membrane proteins such as transporters, receptors, or channels often exhibit structural symmetry. Symmetry is perfect in homo-oligomers consisting of two or more copies of the same protein chain. Intriguingly, in single chain membrane proteins, often internal pseudo-symmetry is observed, in particular in transporters and channels. In several cases single chain proteins with pseudo-symmetry exist, that share the fold with homo-oligomers suggesting evolutionary pathways that involve gene duplication and fusion. It has been hypothesized that such evolutionary pathways allow for the rapid development of large proteins with novel functionality. At the same time symmetry can be leveraged to recognize highly symmetric substrates such as ions. Here we review helical transporter proteins with an inverted two-fold pseudo-symmetry. In this special scenario the symmetry axis lies in the membrane plane. As a result, the putative ancestral monomeric protein would insert in both directions into the membrane and its open-to-the-inside and open-to-the-outside conformations would be structurally identical and iso-energetic, giving a possible evolutionary pathway to create a transporter protein that needs to flip between the two states. Research Network of Computational and Structural Biotechnology (RNCSB) Organization 2013-11-09 /pmc/articles/PMC3962082/ /pubmed/24688744 http://dx.doi.org/10.5936/csbj.201308004 Text en © Duran and Meiler. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly cited.
spellingShingle Mini Reviews
Duran, Amanda M
Meiler, Jens
Inverted Topologies in Membrane Proteins: A Mini-Review
title Inverted Topologies in Membrane Proteins: A Mini-Review
title_full Inverted Topologies in Membrane Proteins: A Mini-Review
title_fullStr Inverted Topologies in Membrane Proteins: A Mini-Review
title_full_unstemmed Inverted Topologies in Membrane Proteins: A Mini-Review
title_short Inverted Topologies in Membrane Proteins: A Mini-Review
title_sort inverted topologies in membrane proteins: a mini-review
topic Mini Reviews
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3962082/
https://www.ncbi.nlm.nih.gov/pubmed/24688744
http://dx.doi.org/10.5936/csbj.201308004
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