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Limiting factors in single particle cryo electron tomography
Modern methods of cryo electron microscopy and tomography allow visualization of protein nanomachines in their native state at the nanometer scale. Image processing methods including sub-volume averaging applied to repeating macromolecular elements within tomograms allow exploring their structures w...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Research Network of Computational and Structural Biotechnology (RNCSB) Organization
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3962116/ https://www.ncbi.nlm.nih.gov/pubmed/24688638 http://dx.doi.org/10.5936/csbj.201207002 |
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author | Kudryashev, Mikhail Castaño-Díez, Daniel Stahlberg, Henning |
author_facet | Kudryashev, Mikhail Castaño-Díez, Daniel Stahlberg, Henning |
author_sort | Kudryashev, Mikhail |
collection | PubMed |
description | Modern methods of cryo electron microscopy and tomography allow visualization of protein nanomachines in their native state at the nanometer scale. Image processing methods including sub-volume averaging applied to repeating macromolecular elements within tomograms allow exploring their structures within the native context of the cell, avoiding the need for protein isolation and purification. Today, many different data acquisition protocols and software solutions are available to researchers to determine average structures of macromolecular complexes and potentially to classify structural intermediates. Here, we list the density maps reported in the literature, and analyze each structure for the chosen instrumental settings, sample conditions, main processing steps, and obtained resolution. We present conclusions that identify factors currently limiting the resolution gained by this approach. |
format | Online Article Text |
id | pubmed-3962116 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Research Network of Computational and Structural Biotechnology (RNCSB) Organization |
record_format | MEDLINE/PubMed |
spelling | pubmed-39621162014-03-31 Limiting factors in single particle cryo electron tomography Kudryashev, Mikhail Castaño-Díez, Daniel Stahlberg, Henning Comput Struct Biotechnol J Mini Review Modern methods of cryo electron microscopy and tomography allow visualization of protein nanomachines in their native state at the nanometer scale. Image processing methods including sub-volume averaging applied to repeating macromolecular elements within tomograms allow exploring their structures within the native context of the cell, avoiding the need for protein isolation and purification. Today, many different data acquisition protocols and software solutions are available to researchers to determine average structures of macromolecular complexes and potentially to classify structural intermediates. Here, we list the density maps reported in the literature, and analyze each structure for the chosen instrumental settings, sample conditions, main processing steps, and obtained resolution. We present conclusions that identify factors currently limiting the resolution gained by this approach. Research Network of Computational and Structural Biotechnology (RNCSB) Organization 2012-07-01 /pmc/articles/PMC3962116/ /pubmed/24688638 http://dx.doi.org/10.5936/csbj.201207002 Text en © Kudryashev et al. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly cited. |
spellingShingle | Mini Review Kudryashev, Mikhail Castaño-Díez, Daniel Stahlberg, Henning Limiting factors in single particle cryo electron tomography |
title | Limiting factors in single particle cryo electron tomography |
title_full | Limiting factors in single particle cryo electron tomography |
title_fullStr | Limiting factors in single particle cryo electron tomography |
title_full_unstemmed | Limiting factors in single particle cryo electron tomography |
title_short | Limiting factors in single particle cryo electron tomography |
title_sort | limiting factors in single particle cryo electron tomography |
topic | Mini Review |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3962116/ https://www.ncbi.nlm.nih.gov/pubmed/24688638 http://dx.doi.org/10.5936/csbj.201207002 |
work_keys_str_mv | AT kudryashevmikhail limitingfactorsinsingleparticlecryoelectrontomography AT castanodiezdaniel limitingfactorsinsingleparticlecryoelectrontomography AT stahlberghenning limitingfactorsinsingleparticlecryoelectrontomography |