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Emerging role of N- and C-terminal interactions in stabilizing (β/α)(8) fold with special emphasis on Family 10 xylanases

Xylanases belong to an important class of industrial enzymes. Various xylanases have been purified and characterized from a plethora of organisms including bacteria, marine algae, plants, protozoans, insects, snails and crustaceans. Depending on the source, the enzymatic activity of xylanases varies...

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Autores principales: Bhardwaj, Amit, Mahanta, Pranjal, Ramakumar, Suryanarayanarao, Ghosh, Amit, Leelavathi, Sadhu, Reddy, Vanga Siva
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Research Network of Computational and Structural Biotechnology (RNCSB) Organization 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3962208/
https://www.ncbi.nlm.nih.gov/pubmed/24688655
http://dx.doi.org/10.5936/csbj.201209014
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author Bhardwaj, Amit
Mahanta, Pranjal
Ramakumar, Suryanarayanarao
Ghosh, Amit
Leelavathi, Sadhu
Reddy, Vanga Siva
author_facet Bhardwaj, Amit
Mahanta, Pranjal
Ramakumar, Suryanarayanarao
Ghosh, Amit
Leelavathi, Sadhu
Reddy, Vanga Siva
author_sort Bhardwaj, Amit
collection PubMed
description Xylanases belong to an important class of industrial enzymes. Various xylanases have been purified and characterized from a plethora of organisms including bacteria, marine algae, plants, protozoans, insects, snails and crustaceans. Depending on the source, the enzymatic activity of xylanases varies considerably under various physico-chemical conditions such as temperature, pH, high salt and in the presence of proteases. Family 10 or glycosyl hydrolase 10 (GH10) xylanases are one of the well characterized and thoroughly studied classes of industrial enzymes. The TIM-barrel fold structure which is ubiquitous in nature is one of the characteristics of family 10 xylanases. Family 10 xylanases have been used as a “model system” due to their TIM-barrel fold to dissect and understand protein stability under various conditions. A better understanding of structure-stability-function relationships of family 10 xylanases allows one to apply these governing molecular rules to engineer other TIM-barrel fold proteins to improve their stability and retain function(s) under adverse conditions. In this review, we discuss the implications of N-and C-terminal interactions, observed in family 10 xylanases on protein stability under extreme conditions. The role of metal binding and aromatic clusters in protein stability is also discussed. Studying and understanding family 10 xylanase structure and function, can contribute to our protein engineering knowledge.
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spelling pubmed-39622082014-03-31 Emerging role of N- and C-terminal interactions in stabilizing (β/α)(8) fold with special emphasis on Family 10 xylanases Bhardwaj, Amit Mahanta, Pranjal Ramakumar, Suryanarayanarao Ghosh, Amit Leelavathi, Sadhu Reddy, Vanga Siva Comput Struct Biotechnol J Review Article Xylanases belong to an important class of industrial enzymes. Various xylanases have been purified and characterized from a plethora of organisms including bacteria, marine algae, plants, protozoans, insects, snails and crustaceans. Depending on the source, the enzymatic activity of xylanases varies considerably under various physico-chemical conditions such as temperature, pH, high salt and in the presence of proteases. Family 10 or glycosyl hydrolase 10 (GH10) xylanases are one of the well characterized and thoroughly studied classes of industrial enzymes. The TIM-barrel fold structure which is ubiquitous in nature is one of the characteristics of family 10 xylanases. Family 10 xylanases have been used as a “model system” due to their TIM-barrel fold to dissect and understand protein stability under various conditions. A better understanding of structure-stability-function relationships of family 10 xylanases allows one to apply these governing molecular rules to engineer other TIM-barrel fold proteins to improve their stability and retain function(s) under adverse conditions. In this review, we discuss the implications of N-and C-terminal interactions, observed in family 10 xylanases on protein stability under extreme conditions. The role of metal binding and aromatic clusters in protein stability is also discussed. Studying and understanding family 10 xylanase structure and function, can contribute to our protein engineering knowledge. Research Network of Computational and Structural Biotechnology (RNCSB) Organization 2012-11-01 /pmc/articles/PMC3962208/ /pubmed/24688655 http://dx.doi.org/10.5936/csbj.201209014 Text en © Bhardwaj et al. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly cited.
spellingShingle Review Article
Bhardwaj, Amit
Mahanta, Pranjal
Ramakumar, Suryanarayanarao
Ghosh, Amit
Leelavathi, Sadhu
Reddy, Vanga Siva
Emerging role of N- and C-terminal interactions in stabilizing (β/α)(8) fold with special emphasis on Family 10 xylanases
title Emerging role of N- and C-terminal interactions in stabilizing (β/α)(8) fold with special emphasis on Family 10 xylanases
title_full Emerging role of N- and C-terminal interactions in stabilizing (β/α)(8) fold with special emphasis on Family 10 xylanases
title_fullStr Emerging role of N- and C-terminal interactions in stabilizing (β/α)(8) fold with special emphasis on Family 10 xylanases
title_full_unstemmed Emerging role of N- and C-terminal interactions in stabilizing (β/α)(8) fold with special emphasis on Family 10 xylanases
title_short Emerging role of N- and C-terminal interactions in stabilizing (β/α)(8) fold with special emphasis on Family 10 xylanases
title_sort emerging role of n- and c-terminal interactions in stabilizing (β/α)(8) fold with special emphasis on family 10 xylanases
topic Review Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3962208/
https://www.ncbi.nlm.nih.gov/pubmed/24688655
http://dx.doi.org/10.5936/csbj.201209014
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