Cargando…

Linking multiple biodiversity informatics platforms with Darwin Core Archives

Abstract. We describe an implementation of the Darwin Core Archive (DwC-A) standard that allows for the exchange of biodiversity information contained within the Scratchpads virtual research environment with external collaborators. Using this single archive file Scratchpad users can expose taxonomie...

Descripción completa

Detalles Bibliográficos
Autores principales: Baker, Ed, Rycroft, Simon, Smith, Vincent S
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Pensoft Publishers 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3964728/
https://www.ncbi.nlm.nih.gov/pubmed/24723785
http://dx.doi.org/10.3897/BDJ.2.e1039
_version_ 1782479231301713920
author Baker, Ed
Rycroft, Simon
Smith, Vincent S
author_facet Baker, Ed
Rycroft, Simon
Smith, Vincent S
author_sort Baker, Ed
collection PubMed
description Abstract. We describe an implementation of the Darwin Core Archive (DwC-A) standard that allows for the exchange of biodiversity information contained within the Scratchpads virtual research environment with external collaborators. Using this single archive file Scratchpad users can expose taxonomies, specimen records, species descriptions and a range of other data to a variety of third-party aggregators and tools (currently Encyclopedia of Life, eMonocot Portal, CartoDB, and the Common Data Model) for secondary use. This paper describes our technical approach to dynamically building and validating Darwin Core Archives for the 600+ Scratchpad user communities, which can be used to serve the diverse data needs of all of our content partners.
format Online
Article
Text
id pubmed-3964728
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher Pensoft Publishers
record_format MEDLINE/PubMed
spelling pubmed-39647282014-04-10 Linking multiple biodiversity informatics platforms with Darwin Core Archives Baker, Ed Rycroft, Simon Smith, Vincent S Biodivers Data J Bioinformatics Abstract. We describe an implementation of the Darwin Core Archive (DwC-A) standard that allows for the exchange of biodiversity information contained within the Scratchpads virtual research environment with external collaborators. Using this single archive file Scratchpad users can expose taxonomies, specimen records, species descriptions and a range of other data to a variety of third-party aggregators and tools (currently Encyclopedia of Life, eMonocot Portal, CartoDB, and the Common Data Model) for secondary use. This paper describes our technical approach to dynamically building and validating Darwin Core Archives for the 600+ Scratchpad user communities, which can be used to serve the diverse data needs of all of our content partners. Pensoft Publishers 2014-01-08 /pmc/articles/PMC3964728/ /pubmed/24723785 http://dx.doi.org/10.3897/BDJ.2.e1039 Text en Ed Baker, Simon Rycroft, Vincent S Smith http://creativecommons.org/licenses/by/4.0 This is an open access article distributed under the terms of the Creative Commons Attribution License 4.0 (CC-BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Bioinformatics
Baker, Ed
Rycroft, Simon
Smith, Vincent S
Linking multiple biodiversity informatics platforms with Darwin Core Archives
title Linking multiple biodiversity informatics platforms with Darwin Core Archives
title_full Linking multiple biodiversity informatics platforms with Darwin Core Archives
title_fullStr Linking multiple biodiversity informatics platforms with Darwin Core Archives
title_full_unstemmed Linking multiple biodiversity informatics platforms with Darwin Core Archives
title_short Linking multiple biodiversity informatics platforms with Darwin Core Archives
title_sort linking multiple biodiversity informatics platforms with darwin core archives
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3964728/
https://www.ncbi.nlm.nih.gov/pubmed/24723785
http://dx.doi.org/10.3897/BDJ.2.e1039
work_keys_str_mv AT bakered linkingmultiplebiodiversityinformaticsplatformswithdarwincorearchives
AT rycroftsimon linkingmultiplebiodiversityinformaticsplatformswithdarwincorearchives
AT smithvincents linkingmultiplebiodiversityinformaticsplatformswithdarwincorearchives