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Linking multiple biodiversity informatics platforms with Darwin Core Archives
Abstract. We describe an implementation of the Darwin Core Archive (DwC-A) standard that allows for the exchange of biodiversity information contained within the Scratchpads virtual research environment with external collaborators. Using this single archive file Scratchpad users can expose taxonomie...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Pensoft Publishers
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3964728/ https://www.ncbi.nlm.nih.gov/pubmed/24723785 http://dx.doi.org/10.3897/BDJ.2.e1039 |
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author | Baker, Ed Rycroft, Simon Smith, Vincent S |
author_facet | Baker, Ed Rycroft, Simon Smith, Vincent S |
author_sort | Baker, Ed |
collection | PubMed |
description | Abstract. We describe an implementation of the Darwin Core Archive (DwC-A) standard that allows for the exchange of biodiversity information contained within the Scratchpads virtual research environment with external collaborators. Using this single archive file Scratchpad users can expose taxonomies, specimen records, species descriptions and a range of other data to a variety of third-party aggregators and tools (currently Encyclopedia of Life, eMonocot Portal, CartoDB, and the Common Data Model) for secondary use. This paper describes our technical approach to dynamically building and validating Darwin Core Archives for the 600+ Scratchpad user communities, which can be used to serve the diverse data needs of all of our content partners. |
format | Online Article Text |
id | pubmed-3964728 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Pensoft Publishers |
record_format | MEDLINE/PubMed |
spelling | pubmed-39647282014-04-10 Linking multiple biodiversity informatics platforms with Darwin Core Archives Baker, Ed Rycroft, Simon Smith, Vincent S Biodivers Data J Bioinformatics Abstract. We describe an implementation of the Darwin Core Archive (DwC-A) standard that allows for the exchange of biodiversity information contained within the Scratchpads virtual research environment with external collaborators. Using this single archive file Scratchpad users can expose taxonomies, specimen records, species descriptions and a range of other data to a variety of third-party aggregators and tools (currently Encyclopedia of Life, eMonocot Portal, CartoDB, and the Common Data Model) for secondary use. This paper describes our technical approach to dynamically building and validating Darwin Core Archives for the 600+ Scratchpad user communities, which can be used to serve the diverse data needs of all of our content partners. Pensoft Publishers 2014-01-08 /pmc/articles/PMC3964728/ /pubmed/24723785 http://dx.doi.org/10.3897/BDJ.2.e1039 Text en Ed Baker, Simon Rycroft, Vincent S Smith http://creativecommons.org/licenses/by/4.0 This is an open access article distributed under the terms of the Creative Commons Attribution License 4.0 (CC-BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Bioinformatics Baker, Ed Rycroft, Simon Smith, Vincent S Linking multiple biodiversity informatics platforms with Darwin Core Archives |
title | Linking multiple biodiversity informatics platforms with Darwin Core Archives |
title_full | Linking multiple biodiversity informatics platforms with Darwin Core Archives |
title_fullStr | Linking multiple biodiversity informatics platforms with Darwin Core Archives |
title_full_unstemmed | Linking multiple biodiversity informatics platforms with Darwin Core Archives |
title_short | Linking multiple biodiversity informatics platforms with Darwin Core Archives |
title_sort | linking multiple biodiversity informatics platforms with darwin core archives |
topic | Bioinformatics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3964728/ https://www.ncbi.nlm.nih.gov/pubmed/24723785 http://dx.doi.org/10.3897/BDJ.2.e1039 |
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