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The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data
The International Mouse Phenotyping Consortium (IMPC) web portal (http://www.mousephenotype.org) provides the biomedical community with a unified point of access to mutant mice and rich collection of related emerging and existing mouse phenotype data. IMPC mouse clinics worldwide follow rigorous hig...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3964955/ https://www.ncbi.nlm.nih.gov/pubmed/24194600 http://dx.doi.org/10.1093/nar/gkt977 |
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author | Koscielny, Gautier Yaikhom, Gagarine Iyer, Vivek Meehan, Terrence F. Morgan, Hugh Atienza-Herrero, Julian Blake, Andrew Chen, Chao-Kung Easty, Richard Di Fenza, Armida Fiegel, Tanja Grifiths, Mark Horne, Alan Karp, Natasha A. Kurbatova, Natalja Mason, Jeremy C. Matthews, Peter Oakley, Darren J. Qazi, Asfand Regnart, Jack Retha, Ahmad Santos, Luis A. Sneddon, Duncan J. Warren, Jonathan Westerberg, Henrik Wilson, Robert J. Melvin, David G. Smedley, Damian Brown, Steve D. M. Flicek, Paul Skarnes, William C. Mallon, Ann-Marie Parkinson, Helen |
author_facet | Koscielny, Gautier Yaikhom, Gagarine Iyer, Vivek Meehan, Terrence F. Morgan, Hugh Atienza-Herrero, Julian Blake, Andrew Chen, Chao-Kung Easty, Richard Di Fenza, Armida Fiegel, Tanja Grifiths, Mark Horne, Alan Karp, Natasha A. Kurbatova, Natalja Mason, Jeremy C. Matthews, Peter Oakley, Darren J. Qazi, Asfand Regnart, Jack Retha, Ahmad Santos, Luis A. Sneddon, Duncan J. Warren, Jonathan Westerberg, Henrik Wilson, Robert J. Melvin, David G. Smedley, Damian Brown, Steve D. M. Flicek, Paul Skarnes, William C. Mallon, Ann-Marie Parkinson, Helen |
author_sort | Koscielny, Gautier |
collection | PubMed |
description | The International Mouse Phenotyping Consortium (IMPC) web portal (http://www.mousephenotype.org) provides the biomedical community with a unified point of access to mutant mice and rich collection of related emerging and existing mouse phenotype data. IMPC mouse clinics worldwide follow rigorous highly structured and standardized protocols for the experimentation, collection and dissemination of data. Dedicated ‘data wranglers’ work with each phenotyping center to collate data and perform quality control of data. An automated statistical analysis pipeline has been developed to identify knockout strains with a significant change in the phenotype parameters. Annotation with biomedical ontologies allows biologists and clinicians to easily find mouse strains with phenotypic traits relevant to their research. Data integration with other resources will provide insights into mammalian gene function and human disease. As phenotype data become available for every gene in the mouse, the IMPC web portal will become an invaluable tool for researchers studying the genetic contributions of genes to human diseases. |
format | Online Article Text |
id | pubmed-3964955 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-39649552014-03-25 The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data Koscielny, Gautier Yaikhom, Gagarine Iyer, Vivek Meehan, Terrence F. Morgan, Hugh Atienza-Herrero, Julian Blake, Andrew Chen, Chao-Kung Easty, Richard Di Fenza, Armida Fiegel, Tanja Grifiths, Mark Horne, Alan Karp, Natasha A. Kurbatova, Natalja Mason, Jeremy C. Matthews, Peter Oakley, Darren J. Qazi, Asfand Regnart, Jack Retha, Ahmad Santos, Luis A. Sneddon, Duncan J. Warren, Jonathan Westerberg, Henrik Wilson, Robert J. Melvin, David G. Smedley, Damian Brown, Steve D. M. Flicek, Paul Skarnes, William C. Mallon, Ann-Marie Parkinson, Helen Nucleic Acids Res V. Human genome, model organisms, comparative genomics The International Mouse Phenotyping Consortium (IMPC) web portal (http://www.mousephenotype.org) provides the biomedical community with a unified point of access to mutant mice and rich collection of related emerging and existing mouse phenotype data. IMPC mouse clinics worldwide follow rigorous highly structured and standardized protocols for the experimentation, collection and dissemination of data. Dedicated ‘data wranglers’ work with each phenotyping center to collate data and perform quality control of data. An automated statistical analysis pipeline has been developed to identify knockout strains with a significant change in the phenotype parameters. Annotation with biomedical ontologies allows biologists and clinicians to easily find mouse strains with phenotypic traits relevant to their research. Data integration with other resources will provide insights into mammalian gene function and human disease. As phenotype data become available for every gene in the mouse, the IMPC web portal will become an invaluable tool for researchers studying the genetic contributions of genes to human diseases. Oxford University Press 2014-01-01 2013-11-03 /pmc/articles/PMC3964955/ /pubmed/24194600 http://dx.doi.org/10.1093/nar/gkt977 Text en © The Author(s) 2013. Published by Oxford University Press. http://creativecommons.org/licenses/by/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by/3.0/), which permits non-commercial reuse, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | V. Human genome, model organisms, comparative genomics Koscielny, Gautier Yaikhom, Gagarine Iyer, Vivek Meehan, Terrence F. Morgan, Hugh Atienza-Herrero, Julian Blake, Andrew Chen, Chao-Kung Easty, Richard Di Fenza, Armida Fiegel, Tanja Grifiths, Mark Horne, Alan Karp, Natasha A. Kurbatova, Natalja Mason, Jeremy C. Matthews, Peter Oakley, Darren J. Qazi, Asfand Regnart, Jack Retha, Ahmad Santos, Luis A. Sneddon, Duncan J. Warren, Jonathan Westerberg, Henrik Wilson, Robert J. Melvin, David G. Smedley, Damian Brown, Steve D. M. Flicek, Paul Skarnes, William C. Mallon, Ann-Marie Parkinson, Helen The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data |
title | The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data |
title_full | The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data |
title_fullStr | The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data |
title_full_unstemmed | The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data |
title_short | The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data |
title_sort | international mouse phenotyping consortium web portal, a unified point of access for knockout mice and related phenotyping data |
topic | V. Human genome, model organisms, comparative genomics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3964955/ https://www.ncbi.nlm.nih.gov/pubmed/24194600 http://dx.doi.org/10.1093/nar/gkt977 |
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