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The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data

The International Mouse Phenotyping Consortium (IMPC) web portal (http://www.mousephenotype.org) provides the biomedical community with a unified point of access to mutant mice and rich collection of related emerging and existing mouse phenotype data. IMPC mouse clinics worldwide follow rigorous hig...

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Autores principales: Koscielny, Gautier, Yaikhom, Gagarine, Iyer, Vivek, Meehan, Terrence F., Morgan, Hugh, Atienza-Herrero, Julian, Blake, Andrew, Chen, Chao-Kung, Easty, Richard, Di Fenza, Armida, Fiegel, Tanja, Grifiths, Mark, Horne, Alan, Karp, Natasha A., Kurbatova, Natalja, Mason, Jeremy C., Matthews, Peter, Oakley, Darren J., Qazi, Asfand, Regnart, Jack, Retha, Ahmad, Santos, Luis A., Sneddon, Duncan J., Warren, Jonathan, Westerberg, Henrik, Wilson, Robert J., Melvin, David G., Smedley, Damian, Brown, Steve D. M., Flicek, Paul, Skarnes, William C., Mallon, Ann-Marie, Parkinson, Helen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3964955/
https://www.ncbi.nlm.nih.gov/pubmed/24194600
http://dx.doi.org/10.1093/nar/gkt977
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author Koscielny, Gautier
Yaikhom, Gagarine
Iyer, Vivek
Meehan, Terrence F.
Morgan, Hugh
Atienza-Herrero, Julian
Blake, Andrew
Chen, Chao-Kung
Easty, Richard
Di Fenza, Armida
Fiegel, Tanja
Grifiths, Mark
Horne, Alan
Karp, Natasha A.
Kurbatova, Natalja
Mason, Jeremy C.
Matthews, Peter
Oakley, Darren J.
Qazi, Asfand
Regnart, Jack
Retha, Ahmad
Santos, Luis A.
Sneddon, Duncan J.
Warren, Jonathan
Westerberg, Henrik
Wilson, Robert J.
Melvin, David G.
Smedley, Damian
Brown, Steve D. M.
Flicek, Paul
Skarnes, William C.
Mallon, Ann-Marie
Parkinson, Helen
author_facet Koscielny, Gautier
Yaikhom, Gagarine
Iyer, Vivek
Meehan, Terrence F.
Morgan, Hugh
Atienza-Herrero, Julian
Blake, Andrew
Chen, Chao-Kung
Easty, Richard
Di Fenza, Armida
Fiegel, Tanja
Grifiths, Mark
Horne, Alan
Karp, Natasha A.
Kurbatova, Natalja
Mason, Jeremy C.
Matthews, Peter
Oakley, Darren J.
Qazi, Asfand
Regnart, Jack
Retha, Ahmad
Santos, Luis A.
Sneddon, Duncan J.
Warren, Jonathan
Westerberg, Henrik
Wilson, Robert J.
Melvin, David G.
Smedley, Damian
Brown, Steve D. M.
Flicek, Paul
Skarnes, William C.
Mallon, Ann-Marie
Parkinson, Helen
author_sort Koscielny, Gautier
collection PubMed
description The International Mouse Phenotyping Consortium (IMPC) web portal (http://www.mousephenotype.org) provides the biomedical community with a unified point of access to mutant mice and rich collection of related emerging and existing mouse phenotype data. IMPC mouse clinics worldwide follow rigorous highly structured and standardized protocols for the experimentation, collection and dissemination of data. Dedicated ‘data wranglers’ work with each phenotyping center to collate data and perform quality control of data. An automated statistical analysis pipeline has been developed to identify knockout strains with a significant change in the phenotype parameters. Annotation with biomedical ontologies allows biologists and clinicians to easily find mouse strains with phenotypic traits relevant to their research. Data integration with other resources will provide insights into mammalian gene function and human disease. As phenotype data become available for every gene in the mouse, the IMPC web portal will become an invaluable tool for researchers studying the genetic contributions of genes to human diseases.
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spelling pubmed-39649552014-03-25 The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data Koscielny, Gautier Yaikhom, Gagarine Iyer, Vivek Meehan, Terrence F. Morgan, Hugh Atienza-Herrero, Julian Blake, Andrew Chen, Chao-Kung Easty, Richard Di Fenza, Armida Fiegel, Tanja Grifiths, Mark Horne, Alan Karp, Natasha A. Kurbatova, Natalja Mason, Jeremy C. Matthews, Peter Oakley, Darren J. Qazi, Asfand Regnart, Jack Retha, Ahmad Santos, Luis A. Sneddon, Duncan J. Warren, Jonathan Westerberg, Henrik Wilson, Robert J. Melvin, David G. Smedley, Damian Brown, Steve D. M. Flicek, Paul Skarnes, William C. Mallon, Ann-Marie Parkinson, Helen Nucleic Acids Res V. Human genome, model organisms, comparative genomics The International Mouse Phenotyping Consortium (IMPC) web portal (http://www.mousephenotype.org) provides the biomedical community with a unified point of access to mutant mice and rich collection of related emerging and existing mouse phenotype data. IMPC mouse clinics worldwide follow rigorous highly structured and standardized protocols for the experimentation, collection and dissemination of data. Dedicated ‘data wranglers’ work with each phenotyping center to collate data and perform quality control of data. An automated statistical analysis pipeline has been developed to identify knockout strains with a significant change in the phenotype parameters. Annotation with biomedical ontologies allows biologists and clinicians to easily find mouse strains with phenotypic traits relevant to their research. Data integration with other resources will provide insights into mammalian gene function and human disease. As phenotype data become available for every gene in the mouse, the IMPC web portal will become an invaluable tool for researchers studying the genetic contributions of genes to human diseases. Oxford University Press 2014-01-01 2013-11-03 /pmc/articles/PMC3964955/ /pubmed/24194600 http://dx.doi.org/10.1093/nar/gkt977 Text en © The Author(s) 2013. Published by Oxford University Press. http://creativecommons.org/licenses/by/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by/3.0/), which permits non-commercial reuse, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle V. Human genome, model organisms, comparative genomics
Koscielny, Gautier
Yaikhom, Gagarine
Iyer, Vivek
Meehan, Terrence F.
Morgan, Hugh
Atienza-Herrero, Julian
Blake, Andrew
Chen, Chao-Kung
Easty, Richard
Di Fenza, Armida
Fiegel, Tanja
Grifiths, Mark
Horne, Alan
Karp, Natasha A.
Kurbatova, Natalja
Mason, Jeremy C.
Matthews, Peter
Oakley, Darren J.
Qazi, Asfand
Regnart, Jack
Retha, Ahmad
Santos, Luis A.
Sneddon, Duncan J.
Warren, Jonathan
Westerberg, Henrik
Wilson, Robert J.
Melvin, David G.
Smedley, Damian
Brown, Steve D. M.
Flicek, Paul
Skarnes, William C.
Mallon, Ann-Marie
Parkinson, Helen
The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data
title The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data
title_full The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data
title_fullStr The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data
title_full_unstemmed The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data
title_short The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data
title_sort international mouse phenotyping consortium web portal, a unified point of access for knockout mice and related phenotyping data
topic V. Human genome, model organisms, comparative genomics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3964955/
https://www.ncbi.nlm.nih.gov/pubmed/24194600
http://dx.doi.org/10.1093/nar/gkt977
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