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Hemolytik: a database of experimentally determined hemolytic and non-hemolytic peptides
Hemolytik (http://crdd.osdd.net/raghava/hemolytik/) is a manually curated database of experimentally determined hemolytic and non-hemolytic peptides. Data were compiled from a large number of published research articles and various databases like Antimicrobial Peptide Database, Collection of Anti-mi...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3964980/ https://www.ncbi.nlm.nih.gov/pubmed/24174543 http://dx.doi.org/10.1093/nar/gkt1008 |
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author | Gautam, Ankur Chaudhary, Kumardeep Singh, Sandeep Joshi, Anshika Anand, Priya Tuknait, Abhishek Mathur, Deepika Varshney, Grish C. Raghava, Gajendra P. S. |
author_facet | Gautam, Ankur Chaudhary, Kumardeep Singh, Sandeep Joshi, Anshika Anand, Priya Tuknait, Abhishek Mathur, Deepika Varshney, Grish C. Raghava, Gajendra P. S. |
author_sort | Gautam, Ankur |
collection | PubMed |
description | Hemolytik (http://crdd.osdd.net/raghava/hemolytik/) is a manually curated database of experimentally determined hemolytic and non-hemolytic peptides. Data were compiled from a large number of published research articles and various databases like Antimicrobial Peptide Database, Collection of Anti-microbial Peptides, Dragon Antimicrobial Peptide Database and Swiss-Prot. The current release of Hemolytik database contains ∼3000 entries that include ∼2000 unique peptides whose hemolytic activities were evaluated on erythrocytes isolated from as many as 17 different sources. Each entry in Hemolytik provides comprehensive information about a peptide, like its name, sequence, origin, reported function, property such as chirality, types (linear and cyclic), end modifications as well as details pertaining to its hemolytic activity. In addition, tertiary structure of each peptide has been predicted, and secondary structure states have been assigned. To facilitate the scientific community, a user-friendly interface has been developed with various tools for data searching and analysis. We hope, Hemolytik will be useful for researchers working in the field of designing therapeutic peptides. |
format | Online Article Text |
id | pubmed-3964980 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-39649802014-03-25 Hemolytik: a database of experimentally determined hemolytic and non-hemolytic peptides Gautam, Ankur Chaudhary, Kumardeep Singh, Sandeep Joshi, Anshika Anand, Priya Tuknait, Abhishek Mathur, Deepika Varshney, Grish C. Raghava, Gajendra P. S. Nucleic Acids Res II. Protein sequence and structure, motifs and domains Hemolytik (http://crdd.osdd.net/raghava/hemolytik/) is a manually curated database of experimentally determined hemolytic and non-hemolytic peptides. Data were compiled from a large number of published research articles and various databases like Antimicrobial Peptide Database, Collection of Anti-microbial Peptides, Dragon Antimicrobial Peptide Database and Swiss-Prot. The current release of Hemolytik database contains ∼3000 entries that include ∼2000 unique peptides whose hemolytic activities were evaluated on erythrocytes isolated from as many as 17 different sources. Each entry in Hemolytik provides comprehensive information about a peptide, like its name, sequence, origin, reported function, property such as chirality, types (linear and cyclic), end modifications as well as details pertaining to its hemolytic activity. In addition, tertiary structure of each peptide has been predicted, and secondary structure states have been assigned. To facilitate the scientific community, a user-friendly interface has been developed with various tools for data searching and analysis. We hope, Hemolytik will be useful for researchers working in the field of designing therapeutic peptides. Oxford University Press 2014-01-01 2013-10-29 /pmc/articles/PMC3964980/ /pubmed/24174543 http://dx.doi.org/10.1093/nar/gkt1008 Text en © The Author(s) 2013. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0/), which permits non-commercial reuse, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | II. Protein sequence and structure, motifs and domains Gautam, Ankur Chaudhary, Kumardeep Singh, Sandeep Joshi, Anshika Anand, Priya Tuknait, Abhishek Mathur, Deepika Varshney, Grish C. Raghava, Gajendra P. S. Hemolytik: a database of experimentally determined hemolytic and non-hemolytic peptides |
title | Hemolytik: a database of experimentally determined hemolytic and non-hemolytic peptides |
title_full | Hemolytik: a database of experimentally determined hemolytic and non-hemolytic peptides |
title_fullStr | Hemolytik: a database of experimentally determined hemolytic and non-hemolytic peptides |
title_full_unstemmed | Hemolytik: a database of experimentally determined hemolytic and non-hemolytic peptides |
title_short | Hemolytik: a database of experimentally determined hemolytic and non-hemolytic peptides |
title_sort | hemolytik: a database of experimentally determined hemolytic and non-hemolytic peptides |
topic | II. Protein sequence and structure, motifs and domains |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3964980/ https://www.ncbi.nlm.nih.gov/pubmed/24174543 http://dx.doi.org/10.1093/nar/gkt1008 |
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