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The Candida Genome Database: The new homology information page highlights protein similarity and phylogeny

The Candida Genome Database (CGD, http://www.candidagenome.org/) is a freely available online resource that provides gene, protein and sequence information for multiple Candida species, along with web-based tools for accessing, analyzing and exploring these data. The goal of CGD is to facilitate and...

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Autores principales: Binkley, Jonathan, Arnaud, Martha B., Inglis, Diane O., Skrzypek, Marek S., Shah, Prachi, Wymore, Farrell, Binkley, Gail, Miyasato, Stuart R., Simison, Matt, Sherlock, Gavin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965001/
https://www.ncbi.nlm.nih.gov/pubmed/24185697
http://dx.doi.org/10.1093/nar/gkt1046
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author Binkley, Jonathan
Arnaud, Martha B.
Inglis, Diane O.
Skrzypek, Marek S.
Shah, Prachi
Wymore, Farrell
Binkley, Gail
Miyasato, Stuart R.
Simison, Matt
Sherlock, Gavin
author_facet Binkley, Jonathan
Arnaud, Martha B.
Inglis, Diane O.
Skrzypek, Marek S.
Shah, Prachi
Wymore, Farrell
Binkley, Gail
Miyasato, Stuart R.
Simison, Matt
Sherlock, Gavin
author_sort Binkley, Jonathan
collection PubMed
description The Candida Genome Database (CGD, http://www.candidagenome.org/) is a freely available online resource that provides gene, protein and sequence information for multiple Candida species, along with web-based tools for accessing, analyzing and exploring these data. The goal of CGD is to facilitate and accelerate research into Candida pathogenesis and biology. The CGD Web site is organized around Locus pages, which display information collected about individual genes. Locus pages have multiple tabs for accessing different types of information; the default Summary tab provides an overview of the gene name, aliases, phenotype and Gene Ontology curation, whereas other tabs display more in-depth information, including protein product details for coding genes, notes on changes to the sequence or structure of the gene and a comprehensive reference list. Here, in this update to previous NAR Database articles featuring CGD, we describe a new tab that we have added to the Locus page, entitled the Homology Information tab, which displays phylogeny and gene similarity information for each locus.
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spelling pubmed-39650012014-03-25 The Candida Genome Database: The new homology information page highlights protein similarity and phylogeny Binkley, Jonathan Arnaud, Martha B. Inglis, Diane O. Skrzypek, Marek S. Shah, Prachi Wymore, Farrell Binkley, Gail Miyasato, Stuart R. Simison, Matt Sherlock, Gavin Nucleic Acids Res IV. Viruses, bacteria, protozoa and fungi The Candida Genome Database (CGD, http://www.candidagenome.org/) is a freely available online resource that provides gene, protein and sequence information for multiple Candida species, along with web-based tools for accessing, analyzing and exploring these data. The goal of CGD is to facilitate and accelerate research into Candida pathogenesis and biology. The CGD Web site is organized around Locus pages, which display information collected about individual genes. Locus pages have multiple tabs for accessing different types of information; the default Summary tab provides an overview of the gene name, aliases, phenotype and Gene Ontology curation, whereas other tabs display more in-depth information, including protein product details for coding genes, notes on changes to the sequence or structure of the gene and a comprehensive reference list. Here, in this update to previous NAR Database articles featuring CGD, we describe a new tab that we have added to the Locus page, entitled the Homology Information tab, which displays phylogeny and gene similarity information for each locus. Oxford University Press 2014-01-01 2013-10-31 /pmc/articles/PMC3965001/ /pubmed/24185697 http://dx.doi.org/10.1093/nar/gkt1046 Text en © The Author(s) 2013. Published by Oxford University Press. http://creativecommons.org/licenses/by/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by/3.0/), which permits non-commercial reuse, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle IV. Viruses, bacteria, protozoa and fungi
Binkley, Jonathan
Arnaud, Martha B.
Inglis, Diane O.
Skrzypek, Marek S.
Shah, Prachi
Wymore, Farrell
Binkley, Gail
Miyasato, Stuart R.
Simison, Matt
Sherlock, Gavin
The Candida Genome Database: The new homology information page highlights protein similarity and phylogeny
title The Candida Genome Database: The new homology information page highlights protein similarity and phylogeny
title_full The Candida Genome Database: The new homology information page highlights protein similarity and phylogeny
title_fullStr The Candida Genome Database: The new homology information page highlights protein similarity and phylogeny
title_full_unstemmed The Candida Genome Database: The new homology information page highlights protein similarity and phylogeny
title_short The Candida Genome Database: The new homology information page highlights protein similarity and phylogeny
title_sort candida genome database: the new homology information page highlights protein similarity and phylogeny
topic IV. Viruses, bacteria, protozoa and fungi
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965001/
https://www.ncbi.nlm.nih.gov/pubmed/24185697
http://dx.doi.org/10.1093/nar/gkt1046
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