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PDBe: Protein Data Bank in Europe

The Protein Data Bank in Europe (pdbe.org) is a founding member of the Worldwide PDB consortium (wwPDB; wwpdb.org) and as such is actively engaged in the deposition, annotation, remediation and dissemination of macromolecular structure data through the single global archive for such data, the PDB. S...

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Autores principales: Gutmanas, Aleksandras, Alhroub, Younes, Battle, Gary M., Berrisford, John M., Bochet, Estelle, Conroy, Matthew J., Dana, Jose M., Fernandez Montecelo, Manuel A., van Ginkel, Glen, Gore, Swanand P., Haslam, Pauline, Hatherley, Rowan, Hendrickx, Pieter M.S., Hirshberg, Miriam, Lagerstedt, Ingvar, Mir, Saqib, Mukhopadhyay, Abhik, Oldfield, Thomas J., Patwardhan, Ardan, Rinaldi, Luana, Sahni, Gaurav, Sanz-García, Eduardo, Sen, Sanchayita, Slowley, Robert A., Velankar, Sameer, Wainwright, Michael E., Kleywegt, Gerard J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965016/
https://www.ncbi.nlm.nih.gov/pubmed/24288376
http://dx.doi.org/10.1093/nar/gkt1180
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author Gutmanas, Aleksandras
Alhroub, Younes
Battle, Gary M.
Berrisford, John M.
Bochet, Estelle
Conroy, Matthew J.
Dana, Jose M.
Fernandez Montecelo, Manuel A.
van Ginkel, Glen
Gore, Swanand P.
Haslam, Pauline
Hatherley, Rowan
Hendrickx, Pieter M.S.
Hirshberg, Miriam
Lagerstedt, Ingvar
Mir, Saqib
Mukhopadhyay, Abhik
Oldfield, Thomas J.
Patwardhan, Ardan
Rinaldi, Luana
Sahni, Gaurav
Sanz-García, Eduardo
Sen, Sanchayita
Slowley, Robert A.
Velankar, Sameer
Wainwright, Michael E.
Kleywegt, Gerard J.
author_facet Gutmanas, Aleksandras
Alhroub, Younes
Battle, Gary M.
Berrisford, John M.
Bochet, Estelle
Conroy, Matthew J.
Dana, Jose M.
Fernandez Montecelo, Manuel A.
van Ginkel, Glen
Gore, Swanand P.
Haslam, Pauline
Hatherley, Rowan
Hendrickx, Pieter M.S.
Hirshberg, Miriam
Lagerstedt, Ingvar
Mir, Saqib
Mukhopadhyay, Abhik
Oldfield, Thomas J.
Patwardhan, Ardan
Rinaldi, Luana
Sahni, Gaurav
Sanz-García, Eduardo
Sen, Sanchayita
Slowley, Robert A.
Velankar, Sameer
Wainwright, Michael E.
Kleywegt, Gerard J.
author_sort Gutmanas, Aleksandras
collection PubMed
description The Protein Data Bank in Europe (pdbe.org) is a founding member of the Worldwide PDB consortium (wwPDB; wwpdb.org) and as such is actively engaged in the deposition, annotation, remediation and dissemination of macromolecular structure data through the single global archive for such data, the PDB. Similarly, PDBe is a member of the EMDataBank organisation (emdatabank.org), which manages the EMDB archive for electron microscopy data. PDBe also develops tools that help the biomedical science community to make effective use of the data in the PDB and EMDB for their research. Here we describe new or improved services, including updated SIFTS mappings to other bioinformatics resources, a new browser for the PDB archive based on Gene Ontology (GO) annotation, updates to the analysis of Nuclear Magnetic Resonance-derived structures, redesigned search and browse interfaces, and new or updated visualisation and validation tools for EMDB entries.
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spelling pubmed-39650162014-03-25 PDBe: Protein Data Bank in Europe Gutmanas, Aleksandras Alhroub, Younes Battle, Gary M. Berrisford, John M. Bochet, Estelle Conroy, Matthew J. Dana, Jose M. Fernandez Montecelo, Manuel A. van Ginkel, Glen Gore, Swanand P. Haslam, Pauline Hatherley, Rowan Hendrickx, Pieter M.S. Hirshberg, Miriam Lagerstedt, Ingvar Mir, Saqib Mukhopadhyay, Abhik Oldfield, Thomas J. Patwardhan, Ardan Rinaldi, Luana Sahni, Gaurav Sanz-García, Eduardo Sen, Sanchayita Slowley, Robert A. Velankar, Sameer Wainwright, Michael E. Kleywegt, Gerard J. Nucleic Acids Res II. Protein sequence and structure, motifs and domains The Protein Data Bank in Europe (pdbe.org) is a founding member of the Worldwide PDB consortium (wwPDB; wwpdb.org) and as such is actively engaged in the deposition, annotation, remediation and dissemination of macromolecular structure data through the single global archive for such data, the PDB. Similarly, PDBe is a member of the EMDataBank organisation (emdatabank.org), which manages the EMDB archive for electron microscopy data. PDBe also develops tools that help the biomedical science community to make effective use of the data in the PDB and EMDB for their research. Here we describe new or improved services, including updated SIFTS mappings to other bioinformatics resources, a new browser for the PDB archive based on Gene Ontology (GO) annotation, updates to the analysis of Nuclear Magnetic Resonance-derived structures, redesigned search and browse interfaces, and new or updated visualisation and validation tools for EMDB entries. Oxford University Press 2014-01-01 2013-11-27 /pmc/articles/PMC3965016/ /pubmed/24288376 http://dx.doi.org/10.1093/nar/gkt1180 Text en © The Author(s) 2013. Published by Oxford University Press. http://creativecommons.org/licenses/by/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by/3.0/), which permits non-commercial reuse, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle II. Protein sequence and structure, motifs and domains
Gutmanas, Aleksandras
Alhroub, Younes
Battle, Gary M.
Berrisford, John M.
Bochet, Estelle
Conroy, Matthew J.
Dana, Jose M.
Fernandez Montecelo, Manuel A.
van Ginkel, Glen
Gore, Swanand P.
Haslam, Pauline
Hatherley, Rowan
Hendrickx, Pieter M.S.
Hirshberg, Miriam
Lagerstedt, Ingvar
Mir, Saqib
Mukhopadhyay, Abhik
Oldfield, Thomas J.
Patwardhan, Ardan
Rinaldi, Luana
Sahni, Gaurav
Sanz-García, Eduardo
Sen, Sanchayita
Slowley, Robert A.
Velankar, Sameer
Wainwright, Michael E.
Kleywegt, Gerard J.
PDBe: Protein Data Bank in Europe
title PDBe: Protein Data Bank in Europe
title_full PDBe: Protein Data Bank in Europe
title_fullStr PDBe: Protein Data Bank in Europe
title_full_unstemmed PDBe: Protein Data Bank in Europe
title_short PDBe: Protein Data Bank in Europe
title_sort pdbe: protein data bank in europe
topic II. Protein sequence and structure, motifs and domains
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965016/
https://www.ncbi.nlm.nih.gov/pubmed/24288376
http://dx.doi.org/10.1093/nar/gkt1180
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