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PDBe: Protein Data Bank in Europe
The Protein Data Bank in Europe (pdbe.org) is a founding member of the Worldwide PDB consortium (wwPDB; wwpdb.org) and as such is actively engaged in the deposition, annotation, remediation and dissemination of macromolecular structure data through the single global archive for such data, the PDB. S...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965016/ https://www.ncbi.nlm.nih.gov/pubmed/24288376 http://dx.doi.org/10.1093/nar/gkt1180 |
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author | Gutmanas, Aleksandras Alhroub, Younes Battle, Gary M. Berrisford, John M. Bochet, Estelle Conroy, Matthew J. Dana, Jose M. Fernandez Montecelo, Manuel A. van Ginkel, Glen Gore, Swanand P. Haslam, Pauline Hatherley, Rowan Hendrickx, Pieter M.S. Hirshberg, Miriam Lagerstedt, Ingvar Mir, Saqib Mukhopadhyay, Abhik Oldfield, Thomas J. Patwardhan, Ardan Rinaldi, Luana Sahni, Gaurav Sanz-García, Eduardo Sen, Sanchayita Slowley, Robert A. Velankar, Sameer Wainwright, Michael E. Kleywegt, Gerard J. |
author_facet | Gutmanas, Aleksandras Alhroub, Younes Battle, Gary M. Berrisford, John M. Bochet, Estelle Conroy, Matthew J. Dana, Jose M. Fernandez Montecelo, Manuel A. van Ginkel, Glen Gore, Swanand P. Haslam, Pauline Hatherley, Rowan Hendrickx, Pieter M.S. Hirshberg, Miriam Lagerstedt, Ingvar Mir, Saqib Mukhopadhyay, Abhik Oldfield, Thomas J. Patwardhan, Ardan Rinaldi, Luana Sahni, Gaurav Sanz-García, Eduardo Sen, Sanchayita Slowley, Robert A. Velankar, Sameer Wainwright, Michael E. Kleywegt, Gerard J. |
author_sort | Gutmanas, Aleksandras |
collection | PubMed |
description | The Protein Data Bank in Europe (pdbe.org) is a founding member of the Worldwide PDB consortium (wwPDB; wwpdb.org) and as such is actively engaged in the deposition, annotation, remediation and dissemination of macromolecular structure data through the single global archive for such data, the PDB. Similarly, PDBe is a member of the EMDataBank organisation (emdatabank.org), which manages the EMDB archive for electron microscopy data. PDBe also develops tools that help the biomedical science community to make effective use of the data in the PDB and EMDB for their research. Here we describe new or improved services, including updated SIFTS mappings to other bioinformatics resources, a new browser for the PDB archive based on Gene Ontology (GO) annotation, updates to the analysis of Nuclear Magnetic Resonance-derived structures, redesigned search and browse interfaces, and new or updated visualisation and validation tools for EMDB entries. |
format | Online Article Text |
id | pubmed-3965016 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-39650162014-03-25 PDBe: Protein Data Bank in Europe Gutmanas, Aleksandras Alhroub, Younes Battle, Gary M. Berrisford, John M. Bochet, Estelle Conroy, Matthew J. Dana, Jose M. Fernandez Montecelo, Manuel A. van Ginkel, Glen Gore, Swanand P. Haslam, Pauline Hatherley, Rowan Hendrickx, Pieter M.S. Hirshberg, Miriam Lagerstedt, Ingvar Mir, Saqib Mukhopadhyay, Abhik Oldfield, Thomas J. Patwardhan, Ardan Rinaldi, Luana Sahni, Gaurav Sanz-García, Eduardo Sen, Sanchayita Slowley, Robert A. Velankar, Sameer Wainwright, Michael E. Kleywegt, Gerard J. Nucleic Acids Res II. Protein sequence and structure, motifs and domains The Protein Data Bank in Europe (pdbe.org) is a founding member of the Worldwide PDB consortium (wwPDB; wwpdb.org) and as such is actively engaged in the deposition, annotation, remediation and dissemination of macromolecular structure data through the single global archive for such data, the PDB. Similarly, PDBe is a member of the EMDataBank organisation (emdatabank.org), which manages the EMDB archive for electron microscopy data. PDBe also develops tools that help the biomedical science community to make effective use of the data in the PDB and EMDB for their research. Here we describe new or improved services, including updated SIFTS mappings to other bioinformatics resources, a new browser for the PDB archive based on Gene Ontology (GO) annotation, updates to the analysis of Nuclear Magnetic Resonance-derived structures, redesigned search and browse interfaces, and new or updated visualisation and validation tools for EMDB entries. Oxford University Press 2014-01-01 2013-11-27 /pmc/articles/PMC3965016/ /pubmed/24288376 http://dx.doi.org/10.1093/nar/gkt1180 Text en © The Author(s) 2013. Published by Oxford University Press. http://creativecommons.org/licenses/by/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by/3.0/), which permits non-commercial reuse, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | II. Protein sequence and structure, motifs and domains Gutmanas, Aleksandras Alhroub, Younes Battle, Gary M. Berrisford, John M. Bochet, Estelle Conroy, Matthew J. Dana, Jose M. Fernandez Montecelo, Manuel A. van Ginkel, Glen Gore, Swanand P. Haslam, Pauline Hatherley, Rowan Hendrickx, Pieter M.S. Hirshberg, Miriam Lagerstedt, Ingvar Mir, Saqib Mukhopadhyay, Abhik Oldfield, Thomas J. Patwardhan, Ardan Rinaldi, Luana Sahni, Gaurav Sanz-García, Eduardo Sen, Sanchayita Slowley, Robert A. Velankar, Sameer Wainwright, Michael E. Kleywegt, Gerard J. PDBe: Protein Data Bank in Europe |
title | PDBe: Protein Data Bank in Europe |
title_full | PDBe: Protein Data Bank in Europe |
title_fullStr | PDBe: Protein Data Bank in Europe |
title_full_unstemmed | PDBe: Protein Data Bank in Europe |
title_short | PDBe: Protein Data Bank in Europe |
title_sort | pdbe: protein data bank in europe |
topic | II. Protein sequence and structure, motifs and domains |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965016/ https://www.ncbi.nlm.nih.gov/pubmed/24288376 http://dx.doi.org/10.1093/nar/gkt1180 |
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