Cargando…
UniHI 7: an enhanced database for retrieval and interactive analysis of human molecular interaction networks
Unified Human Interactome (UniHI) (http://www.unihi.org) is a database for retrieval, analysis and visualization of human molecular interaction networks. Its primary aim is to provide a comprehensive and easy-to-use platform for network-based investigations to a wide community of researchers in biol...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2014
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965034/ https://www.ncbi.nlm.nih.gov/pubmed/24214987 http://dx.doi.org/10.1093/nar/gkt1100 |
_version_ | 1782479283948617728 |
---|---|
author | Kalathur, Ravi Kiran Reddy Pinto, José Pedro Hernández-Prieto, Miguel A. Machado, Rui S.R. Almeida, Dulce Chaurasia, Gautam Futschik, Matthias E. |
author_facet | Kalathur, Ravi Kiran Reddy Pinto, José Pedro Hernández-Prieto, Miguel A. Machado, Rui S.R. Almeida, Dulce Chaurasia, Gautam Futschik, Matthias E. |
author_sort | Kalathur, Ravi Kiran Reddy |
collection | PubMed |
description | Unified Human Interactome (UniHI) (http://www.unihi.org) is a database for retrieval, analysis and visualization of human molecular interaction networks. Its primary aim is to provide a comprehensive and easy-to-use platform for network-based investigations to a wide community of researchers in biology and medicine. Here, we describe a major update (version 7) of the database previously featured in NAR Database Issue. UniHI 7 currently includes almost 350 000 molecular interactions between genes, proteins and drugs, as well as numerous other types of data such as gene expression and functional annotation. Multiple options for interactive filtering and highlighting of proteins can be employed to obtain more reliable and specific network structures. Expression and other genomic data can be uploaded by the user to examine local network structures. Additional built-in tools enable ready identification of known drug targets, as well as of biological processes, phenotypes and pathways enriched with network proteins. A distinctive feature of UniHI 7 is its user-friendly interface designed to be utilized in an intuitive manner, enabling researchers less acquainted with network analysis to perform state-of-the-art network-based investigations. |
format | Online Article Text |
id | pubmed-3965034 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-39650342014-03-25 UniHI 7: an enhanced database for retrieval and interactive analysis of human molecular interaction networks Kalathur, Ravi Kiran Reddy Pinto, José Pedro Hernández-Prieto, Miguel A. Machado, Rui S.R. Almeida, Dulce Chaurasia, Gautam Futschik, Matthias E. Nucleic Acids Res II. Protein sequence and structure, motifs and domains Unified Human Interactome (UniHI) (http://www.unihi.org) is a database for retrieval, analysis and visualization of human molecular interaction networks. Its primary aim is to provide a comprehensive and easy-to-use platform for network-based investigations to a wide community of researchers in biology and medicine. Here, we describe a major update (version 7) of the database previously featured in NAR Database Issue. UniHI 7 currently includes almost 350 000 molecular interactions between genes, proteins and drugs, as well as numerous other types of data such as gene expression and functional annotation. Multiple options for interactive filtering and highlighting of proteins can be employed to obtain more reliable and specific network structures. Expression and other genomic data can be uploaded by the user to examine local network structures. Additional built-in tools enable ready identification of known drug targets, as well as of biological processes, phenotypes and pathways enriched with network proteins. A distinctive feature of UniHI 7 is its user-friendly interface designed to be utilized in an intuitive manner, enabling researchers less acquainted with network analysis to perform state-of-the-art network-based investigations. Oxford University Press 2014-01-01 2013-11-08 /pmc/articles/PMC3965034/ /pubmed/24214987 http://dx.doi.org/10.1093/nar/gkt1100 Text en © The Author(s) 2013. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0/), which permits non-commercial reuse, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | II. Protein sequence and structure, motifs and domains Kalathur, Ravi Kiran Reddy Pinto, José Pedro Hernández-Prieto, Miguel A. Machado, Rui S.R. Almeida, Dulce Chaurasia, Gautam Futschik, Matthias E. UniHI 7: an enhanced database for retrieval and interactive analysis of human molecular interaction networks |
title | UniHI 7: an enhanced database for retrieval and interactive analysis of human molecular interaction networks |
title_full | UniHI 7: an enhanced database for retrieval and interactive analysis of human molecular interaction networks |
title_fullStr | UniHI 7: an enhanced database for retrieval and interactive analysis of human molecular interaction networks |
title_full_unstemmed | UniHI 7: an enhanced database for retrieval and interactive analysis of human molecular interaction networks |
title_short | UniHI 7: an enhanced database for retrieval and interactive analysis of human molecular interaction networks |
title_sort | unihi 7: an enhanced database for retrieval and interactive analysis of human molecular interaction networks |
topic | II. Protein sequence and structure, motifs and domains |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965034/ https://www.ncbi.nlm.nih.gov/pubmed/24214987 http://dx.doi.org/10.1093/nar/gkt1100 |
work_keys_str_mv | AT kalathurravikiranreddy unihi7anenhanceddatabaseforretrievalandinteractiveanalysisofhumanmolecularinteractionnetworks AT pintojosepedro unihi7anenhanceddatabaseforretrievalandinteractiveanalysisofhumanmolecularinteractionnetworks AT hernandezprietomiguela unihi7anenhanceddatabaseforretrievalandinteractiveanalysisofhumanmolecularinteractionnetworks AT machadoruisr unihi7anenhanceddatabaseforretrievalandinteractiveanalysisofhumanmolecularinteractionnetworks AT almeidadulce unihi7anenhanceddatabaseforretrievalandinteractiveanalysisofhumanmolecularinteractionnetworks AT chaurasiagautam unihi7anenhanceddatabaseforretrievalandinteractiveanalysisofhumanmolecularinteractionnetworks AT futschikmatthiase unihi7anenhanceddatabaseforretrievalandinteractiveanalysisofhumanmolecularinteractionnetworks |