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UniHI 7: an enhanced database for retrieval and interactive analysis of human molecular interaction networks

Unified Human Interactome (UniHI) (http://www.unihi.org) is a database for retrieval, analysis and visualization of human molecular interaction networks. Its primary aim is to provide a comprehensive and easy-to-use platform for network-based investigations to a wide community of researchers in biol...

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Autores principales: Kalathur, Ravi Kiran Reddy, Pinto, José Pedro, Hernández-Prieto, Miguel A., Machado, Rui S.R., Almeida, Dulce, Chaurasia, Gautam, Futschik, Matthias E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965034/
https://www.ncbi.nlm.nih.gov/pubmed/24214987
http://dx.doi.org/10.1093/nar/gkt1100
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author Kalathur, Ravi Kiran Reddy
Pinto, José Pedro
Hernández-Prieto, Miguel A.
Machado, Rui S.R.
Almeida, Dulce
Chaurasia, Gautam
Futschik, Matthias E.
author_facet Kalathur, Ravi Kiran Reddy
Pinto, José Pedro
Hernández-Prieto, Miguel A.
Machado, Rui S.R.
Almeida, Dulce
Chaurasia, Gautam
Futschik, Matthias E.
author_sort Kalathur, Ravi Kiran Reddy
collection PubMed
description Unified Human Interactome (UniHI) (http://www.unihi.org) is a database for retrieval, analysis and visualization of human molecular interaction networks. Its primary aim is to provide a comprehensive and easy-to-use platform for network-based investigations to a wide community of researchers in biology and medicine. Here, we describe a major update (version 7) of the database previously featured in NAR Database Issue. UniHI 7 currently includes almost 350 000 molecular interactions between genes, proteins and drugs, as well as numerous other types of data such as gene expression and functional annotation. Multiple options for interactive filtering and highlighting of proteins can be employed to obtain more reliable and specific network structures. Expression and other genomic data can be uploaded by the user to examine local network structures. Additional built-in tools enable ready identification of known drug targets, as well as of biological processes, phenotypes and pathways enriched with network proteins. A distinctive feature of UniHI 7 is its user-friendly interface designed to be utilized in an intuitive manner, enabling researchers less acquainted with network analysis to perform state-of-the-art network-based investigations.
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spelling pubmed-39650342014-03-25 UniHI 7: an enhanced database for retrieval and interactive analysis of human molecular interaction networks Kalathur, Ravi Kiran Reddy Pinto, José Pedro Hernández-Prieto, Miguel A. Machado, Rui S.R. Almeida, Dulce Chaurasia, Gautam Futschik, Matthias E. Nucleic Acids Res II. Protein sequence and structure, motifs and domains Unified Human Interactome (UniHI) (http://www.unihi.org) is a database for retrieval, analysis and visualization of human molecular interaction networks. Its primary aim is to provide a comprehensive and easy-to-use platform for network-based investigations to a wide community of researchers in biology and medicine. Here, we describe a major update (version 7) of the database previously featured in NAR Database Issue. UniHI 7 currently includes almost 350 000 molecular interactions between genes, proteins and drugs, as well as numerous other types of data such as gene expression and functional annotation. Multiple options for interactive filtering and highlighting of proteins can be employed to obtain more reliable and specific network structures. Expression and other genomic data can be uploaded by the user to examine local network structures. Additional built-in tools enable ready identification of known drug targets, as well as of biological processes, phenotypes and pathways enriched with network proteins. A distinctive feature of UniHI 7 is its user-friendly interface designed to be utilized in an intuitive manner, enabling researchers less acquainted with network analysis to perform state-of-the-art network-based investigations. Oxford University Press 2014-01-01 2013-11-08 /pmc/articles/PMC3965034/ /pubmed/24214987 http://dx.doi.org/10.1093/nar/gkt1100 Text en © The Author(s) 2013. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0/), which permits non-commercial reuse, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle II. Protein sequence and structure, motifs and domains
Kalathur, Ravi Kiran Reddy
Pinto, José Pedro
Hernández-Prieto, Miguel A.
Machado, Rui S.R.
Almeida, Dulce
Chaurasia, Gautam
Futschik, Matthias E.
UniHI 7: an enhanced database for retrieval and interactive analysis of human molecular interaction networks
title UniHI 7: an enhanced database for retrieval and interactive analysis of human molecular interaction networks
title_full UniHI 7: an enhanced database for retrieval and interactive analysis of human molecular interaction networks
title_fullStr UniHI 7: an enhanced database for retrieval and interactive analysis of human molecular interaction networks
title_full_unstemmed UniHI 7: an enhanced database for retrieval and interactive analysis of human molecular interaction networks
title_short UniHI 7: an enhanced database for retrieval and interactive analysis of human molecular interaction networks
title_sort unihi 7: an enhanced database for retrieval and interactive analysis of human molecular interaction networks
topic II. Protein sequence and structure, motifs and domains
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965034/
https://www.ncbi.nlm.nih.gov/pubmed/24214987
http://dx.doi.org/10.1093/nar/gkt1100
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