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Assembly information services in the European Nucleotide Archive

The European Nucleotide Archive (ENA; http://www.ebi.ac.uk/ena) is a repository for the world public domain nucleotide sequence data output. ENA content covers a spectrum of data types including raw reads, assembly data and functional annotation. ENA has faced a dramatic growth in genome assembly su...

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Detalles Bibliográficos
Autores principales: Pakseresht, Nima, Alako, Blaise, Amid, Clara, Cerdeño-Tárraga, Ana, Cleland, Iain, Gibson, Richard, Goodgame, Neil, Gur, Tamer, Jang, Mikyung, Kay, Simon, Leinonen, Rasko, Li, Weizhong, Liu, Xin, Lopez, Rodrigo, McWilliam, Hamish, Oisel, Arnaud, Pallreddy, Swapna, Plaister, Sheila, Radhakrishnan, Rajesh, Rivière, Stephane, Rossello, Marc, Senf, Alexander, Silvester, Nicole, Smirnov, Dmitriy, Squizzato, Silvano, Hoopen, Petra ten, Toribio, Ana Luisa, Vaughan, Daniel, Zalunin, Vadim, Cochrane, Guy
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965037/
https://www.ncbi.nlm.nih.gov/pubmed/24214989
http://dx.doi.org/10.1093/nar/gkt1082
Descripción
Sumario:The European Nucleotide Archive (ENA; http://www.ebi.ac.uk/ena) is a repository for the world public domain nucleotide sequence data output. ENA content covers a spectrum of data types including raw reads, assembly data and functional annotation. ENA has faced a dramatic growth in genome assembly submission rates, data volumes and complexity of datasets. This has prompted a broad reworking of assembly submission services, for which we now reach the end of a major programme of work and many enhancements have already been made available over the year to components of the submission service. In this article, we briefly review ENA content and growth over 2013, describe our rapidly developing services for genome assembly information and outline further major developments over the last year.