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Assembly information services in the European Nucleotide Archive

The European Nucleotide Archive (ENA; http://www.ebi.ac.uk/ena) is a repository for the world public domain nucleotide sequence data output. ENA content covers a spectrum of data types including raw reads, assembly data and functional annotation. ENA has faced a dramatic growth in genome assembly su...

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Autores principales: Pakseresht, Nima, Alako, Blaise, Amid, Clara, Cerdeño-Tárraga, Ana, Cleland, Iain, Gibson, Richard, Goodgame, Neil, Gur, Tamer, Jang, Mikyung, Kay, Simon, Leinonen, Rasko, Li, Weizhong, Liu, Xin, Lopez, Rodrigo, McWilliam, Hamish, Oisel, Arnaud, Pallreddy, Swapna, Plaister, Sheila, Radhakrishnan, Rajesh, Rivière, Stephane, Rossello, Marc, Senf, Alexander, Silvester, Nicole, Smirnov, Dmitriy, Squizzato, Silvano, Hoopen, Petra ten, Toribio, Ana Luisa, Vaughan, Daniel, Zalunin, Vadim, Cochrane, Guy
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965037/
https://www.ncbi.nlm.nih.gov/pubmed/24214989
http://dx.doi.org/10.1093/nar/gkt1082
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author Pakseresht, Nima
Alako, Blaise
Amid, Clara
Cerdeño-Tárraga, Ana
Cleland, Iain
Gibson, Richard
Goodgame, Neil
Gur, Tamer
Jang, Mikyung
Kay, Simon
Leinonen, Rasko
Li, Weizhong
Liu, Xin
Lopez, Rodrigo
McWilliam, Hamish
Oisel, Arnaud
Pallreddy, Swapna
Plaister, Sheila
Radhakrishnan, Rajesh
Rivière, Stephane
Rossello, Marc
Senf, Alexander
Silvester, Nicole
Smirnov, Dmitriy
Squizzato, Silvano
Hoopen, Petra ten
Toribio, Ana Luisa
Vaughan, Daniel
Zalunin, Vadim
Cochrane, Guy
author_facet Pakseresht, Nima
Alako, Blaise
Amid, Clara
Cerdeño-Tárraga, Ana
Cleland, Iain
Gibson, Richard
Goodgame, Neil
Gur, Tamer
Jang, Mikyung
Kay, Simon
Leinonen, Rasko
Li, Weizhong
Liu, Xin
Lopez, Rodrigo
McWilliam, Hamish
Oisel, Arnaud
Pallreddy, Swapna
Plaister, Sheila
Radhakrishnan, Rajesh
Rivière, Stephane
Rossello, Marc
Senf, Alexander
Silvester, Nicole
Smirnov, Dmitriy
Squizzato, Silvano
Hoopen, Petra ten
Toribio, Ana Luisa
Vaughan, Daniel
Zalunin, Vadim
Cochrane, Guy
author_sort Pakseresht, Nima
collection PubMed
description The European Nucleotide Archive (ENA; http://www.ebi.ac.uk/ena) is a repository for the world public domain nucleotide sequence data output. ENA content covers a spectrum of data types including raw reads, assembly data and functional annotation. ENA has faced a dramatic growth in genome assembly submission rates, data volumes and complexity of datasets. This has prompted a broad reworking of assembly submission services, for which we now reach the end of a major programme of work and many enhancements have already been made available over the year to components of the submission service. In this article, we briefly review ENA content and growth over 2013, describe our rapidly developing services for genome assembly information and outline further major developments over the last year.
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spelling pubmed-39650372014-03-25 Assembly information services in the European Nucleotide Archive Pakseresht, Nima Alako, Blaise Amid, Clara Cerdeño-Tárraga, Ana Cleland, Iain Gibson, Richard Goodgame, Neil Gur, Tamer Jang, Mikyung Kay, Simon Leinonen, Rasko Li, Weizhong Liu, Xin Lopez, Rodrigo McWilliam, Hamish Oisel, Arnaud Pallreddy, Swapna Plaister, Sheila Radhakrishnan, Rajesh Rivière, Stephane Rossello, Marc Senf, Alexander Silvester, Nicole Smirnov, Dmitriy Squizzato, Silvano Hoopen, Petra ten Toribio, Ana Luisa Vaughan, Daniel Zalunin, Vadim Cochrane, Guy Nucleic Acids Res I. Nucleic acid sequence, structure and regulation The European Nucleotide Archive (ENA; http://www.ebi.ac.uk/ena) is a repository for the world public domain nucleotide sequence data output. ENA content covers a spectrum of data types including raw reads, assembly data and functional annotation. ENA has faced a dramatic growth in genome assembly submission rates, data volumes and complexity of datasets. This has prompted a broad reworking of assembly submission services, for which we now reach the end of a major programme of work and many enhancements have already been made available over the year to components of the submission service. In this article, we briefly review ENA content and growth over 2013, describe our rapidly developing services for genome assembly information and outline further major developments over the last year. Oxford University Press 2014-01-01 2013-11-08 /pmc/articles/PMC3965037/ /pubmed/24214989 http://dx.doi.org/10.1093/nar/gkt1082 Text en © The Author(s) 2013. Published by Oxford University Press. http://creativecommons.org/licenses/by/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by/3.0/), which permits non-commercial reuse, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle I. Nucleic acid sequence, structure and regulation
Pakseresht, Nima
Alako, Blaise
Amid, Clara
Cerdeño-Tárraga, Ana
Cleland, Iain
Gibson, Richard
Goodgame, Neil
Gur, Tamer
Jang, Mikyung
Kay, Simon
Leinonen, Rasko
Li, Weizhong
Liu, Xin
Lopez, Rodrigo
McWilliam, Hamish
Oisel, Arnaud
Pallreddy, Swapna
Plaister, Sheila
Radhakrishnan, Rajesh
Rivière, Stephane
Rossello, Marc
Senf, Alexander
Silvester, Nicole
Smirnov, Dmitriy
Squizzato, Silvano
Hoopen, Petra ten
Toribio, Ana Luisa
Vaughan, Daniel
Zalunin, Vadim
Cochrane, Guy
Assembly information services in the European Nucleotide Archive
title Assembly information services in the European Nucleotide Archive
title_full Assembly information services in the European Nucleotide Archive
title_fullStr Assembly information services in the European Nucleotide Archive
title_full_unstemmed Assembly information services in the European Nucleotide Archive
title_short Assembly information services in the European Nucleotide Archive
title_sort assembly information services in the european nucleotide archive
topic I. Nucleic acid sequence, structure and regulation
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965037/
https://www.ncbi.nlm.nih.gov/pubmed/24214989
http://dx.doi.org/10.1093/nar/gkt1082
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