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Assembly information services in the European Nucleotide Archive
The European Nucleotide Archive (ENA; http://www.ebi.ac.uk/ena) is a repository for the world public domain nucleotide sequence data output. ENA content covers a spectrum of data types including raw reads, assembly data and functional annotation. ENA has faced a dramatic growth in genome assembly su...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965037/ https://www.ncbi.nlm.nih.gov/pubmed/24214989 http://dx.doi.org/10.1093/nar/gkt1082 |
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author | Pakseresht, Nima Alako, Blaise Amid, Clara Cerdeño-Tárraga, Ana Cleland, Iain Gibson, Richard Goodgame, Neil Gur, Tamer Jang, Mikyung Kay, Simon Leinonen, Rasko Li, Weizhong Liu, Xin Lopez, Rodrigo McWilliam, Hamish Oisel, Arnaud Pallreddy, Swapna Plaister, Sheila Radhakrishnan, Rajesh Rivière, Stephane Rossello, Marc Senf, Alexander Silvester, Nicole Smirnov, Dmitriy Squizzato, Silvano Hoopen, Petra ten Toribio, Ana Luisa Vaughan, Daniel Zalunin, Vadim Cochrane, Guy |
author_facet | Pakseresht, Nima Alako, Blaise Amid, Clara Cerdeño-Tárraga, Ana Cleland, Iain Gibson, Richard Goodgame, Neil Gur, Tamer Jang, Mikyung Kay, Simon Leinonen, Rasko Li, Weizhong Liu, Xin Lopez, Rodrigo McWilliam, Hamish Oisel, Arnaud Pallreddy, Swapna Plaister, Sheila Radhakrishnan, Rajesh Rivière, Stephane Rossello, Marc Senf, Alexander Silvester, Nicole Smirnov, Dmitriy Squizzato, Silvano Hoopen, Petra ten Toribio, Ana Luisa Vaughan, Daniel Zalunin, Vadim Cochrane, Guy |
author_sort | Pakseresht, Nima |
collection | PubMed |
description | The European Nucleotide Archive (ENA; http://www.ebi.ac.uk/ena) is a repository for the world public domain nucleotide sequence data output. ENA content covers a spectrum of data types including raw reads, assembly data and functional annotation. ENA has faced a dramatic growth in genome assembly submission rates, data volumes and complexity of datasets. This has prompted a broad reworking of assembly submission services, for which we now reach the end of a major programme of work and many enhancements have already been made available over the year to components of the submission service. In this article, we briefly review ENA content and growth over 2013, describe our rapidly developing services for genome assembly information and outline further major developments over the last year. |
format | Online Article Text |
id | pubmed-3965037 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-39650372014-03-25 Assembly information services in the European Nucleotide Archive Pakseresht, Nima Alako, Blaise Amid, Clara Cerdeño-Tárraga, Ana Cleland, Iain Gibson, Richard Goodgame, Neil Gur, Tamer Jang, Mikyung Kay, Simon Leinonen, Rasko Li, Weizhong Liu, Xin Lopez, Rodrigo McWilliam, Hamish Oisel, Arnaud Pallreddy, Swapna Plaister, Sheila Radhakrishnan, Rajesh Rivière, Stephane Rossello, Marc Senf, Alexander Silvester, Nicole Smirnov, Dmitriy Squizzato, Silvano Hoopen, Petra ten Toribio, Ana Luisa Vaughan, Daniel Zalunin, Vadim Cochrane, Guy Nucleic Acids Res I. Nucleic acid sequence, structure and regulation The European Nucleotide Archive (ENA; http://www.ebi.ac.uk/ena) is a repository for the world public domain nucleotide sequence data output. ENA content covers a spectrum of data types including raw reads, assembly data and functional annotation. ENA has faced a dramatic growth in genome assembly submission rates, data volumes and complexity of datasets. This has prompted a broad reworking of assembly submission services, for which we now reach the end of a major programme of work and many enhancements have already been made available over the year to components of the submission service. In this article, we briefly review ENA content and growth over 2013, describe our rapidly developing services for genome assembly information and outline further major developments over the last year. Oxford University Press 2014-01-01 2013-11-08 /pmc/articles/PMC3965037/ /pubmed/24214989 http://dx.doi.org/10.1093/nar/gkt1082 Text en © The Author(s) 2013. Published by Oxford University Press. http://creativecommons.org/licenses/by/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by/3.0/), which permits non-commercial reuse, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | I. Nucleic acid sequence, structure and regulation Pakseresht, Nima Alako, Blaise Amid, Clara Cerdeño-Tárraga, Ana Cleland, Iain Gibson, Richard Goodgame, Neil Gur, Tamer Jang, Mikyung Kay, Simon Leinonen, Rasko Li, Weizhong Liu, Xin Lopez, Rodrigo McWilliam, Hamish Oisel, Arnaud Pallreddy, Swapna Plaister, Sheila Radhakrishnan, Rajesh Rivière, Stephane Rossello, Marc Senf, Alexander Silvester, Nicole Smirnov, Dmitriy Squizzato, Silvano Hoopen, Petra ten Toribio, Ana Luisa Vaughan, Daniel Zalunin, Vadim Cochrane, Guy Assembly information services in the European Nucleotide Archive |
title | Assembly information services in the European Nucleotide Archive |
title_full | Assembly information services in the European Nucleotide Archive |
title_fullStr | Assembly information services in the European Nucleotide Archive |
title_full_unstemmed | Assembly information services in the European Nucleotide Archive |
title_short | Assembly information services in the European Nucleotide Archive |
title_sort | assembly information services in the european nucleotide archive |
topic | I. Nucleic acid sequence, structure and regulation |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965037/ https://www.ncbi.nlm.nih.gov/pubmed/24214989 http://dx.doi.org/10.1093/nar/gkt1082 |
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