Cargando…

TreeFam v9: a new website, more species and orthology-on-the-fly

TreeFam (http://www.treefam.org) is a database of phylogenetic trees inferred from animal genomes. For every TreeFam family we provide homology predictions together with the evolutionary history of the genes. Here we describe an update of the TreeFam database. The TreeFam project was resurrected in...

Descripción completa

Detalles Bibliográficos
Autores principales:	Schreiber, Fabian, Patricio, Mateus, Muffato, Matthieu, Pignatelli, Miguel, Bateman, Alex
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2014
Materias:	V. Human genome, model organisms, comparative genomics
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965059/ https://www.ncbi.nlm.nih.gov/pubmed/24194607 http://dx.doi.org/10.1093/nar/gkt1055

Ejemplares similares

FlyBase 102—advanced approaches to interrogating FlyBase
por: St. Pierre, Susan E., et al.
Publicado: (2014)

TreeFam: 2008 Update
por: Ruan, Jue, et al.
Publicado: (2008)

Ensembl 2014
por: Flicek, Paul, et al.
Publicado: (2014)

The UCSC Genome Browser database: 2014 update
por: Karolchik, Donna, et al.
Publicado: (2014)

The Mouse Genome Database: integration of and access to knowledge about the laboratory mouse
por: Blake, Judith A., et al.
Publicado: (2014)

The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data
por: Koscielny, Gautier, et al.
Publicado: (2014)

GEISHA: an evolving gene expression resource for the chicken embryo
por: Antin, Parker B., et al.
Publicado: (2014)

Expression Atlas update—a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments
por: Petryszak, Robert, et al.
Publicado: (2014)

The Vertebrate Genome Annotation browser 10 years on
por: Harrow, Jennifer L., et al.
Publicado: (2014)

EMAGE mouse embryo spatial gene expression database: 2014 update
por: Richardson, Lorna, et al.
Publicado: (2014)

GWIPS-viz: development of a ribo-seq genome browser
por: Michel, Audrey M., et al.
Publicado: (2014)

Current status and new features of the Consensus Coding Sequence database
por: Farrell, Catherine M., et al.
Publicado: (2014)

GeneProf data: a resource of curated, integrated and reusable high-throughput genomics experiments
por: Halbritter, Florian, et al.
Publicado: (2014)

CellFinder: a cell data repository
por: Stachelscheid, Harald, et al.
Publicado: (2014)

Mouse Phenome Database
por: Grubb, Stephen C., et al.
Publicado: (2014)

The pancreatic expression database: recent extensions and updates
por: Dayem Ullah, Abu Z., et al.
Publicado: (2014)

WormQTL(HD)—a web database for linking human disease to natural variation data in C. elegans
por: van der Velde, K. Joeri, et al.
Publicado: (2014)

AgeFactDB—the JenAge Ageing Factor Database—towards data integration in ageing research
por: Hühne, Rolf, et al.
Publicado: (2014)

Manteia, a predictive data mining system for vertebrate genes and its applications to human genetic diseases
por: Tassy, Olivier, et al.
Publicado: (2014)

PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome
por: Huerta-Cepas, Jaime, et al.
Publicado: (2014)

dbPSHP: a database of recent positive selection across human populations
por: Li, Mulin Jun, et al.
Publicado: (2014)

The mouse Gene Expression Database (GXD): 2014 update
por: Smith, Constance M., et al.
Publicado: (2014)

RefSeq: an update on mammalian reference sequences
por: Pruitt, Kim D., et al.
Publicado: (2014)

TISdb: a database for alternative translation initiation in mammalian cells
por: Wan, Ji, et al.
Publicado: (2014)

Locus Reference Genomic: reference sequences for the reporting of clinically relevant sequence variants
por: MacArthur, Jacqueline A. L., et al.
Publicado: (2014)

The Gene Expression Barcode 3.0: improved data processing and mining tools
por: McCall, Matthew N., et al.
Publicado: (2014)

Plasma Proteome Database as a resource for proteomics research: 2014 update
por: Nanjappa, Vishalakshi, et al.
Publicado: (2014)

WormBase 2014: new views of curated biology
por: Harris, Todd W., et al.
Publicado: (2014)

1000 Genomes Selection Browser 1.0: a genome browser dedicated to signatures of natural selection in modern humans
por: Pybus, Marc, et al.
Publicado: (2014)

ExoLocator—an online view into genetic makeup of vertebrate proteins
por: Khoo, Aik Aun, et al.
Publicado: (2014)

Selectome update: quality control and computational improvements to a database of positive selection
por: Moretti, Sébastien, et al.
Publicado: (2014)

TreeFam: a curated database of phylogenetic trees of animal gene families
por: Li, Heng, et al.
Publicado: (2006)

FastMulRFS: fast and accurate species tree estimation under generic gene duplication and loss models
por: Molloy, Erin K, et al.
Publicado: (2020)

Gene tree and species tree reconciliation with endosymbiotic gene transfer
por: Anselmetti, Yoann, et al.
Publicado: (2021)

A weighted distance-based approach for deriving consensus tumor evolutionary trees
por: Guang, Ziyun, et al.
Publicado: (2023)

Data-driven speciation tree prior for better species divergence times in calibration-poor molecular phylogenies
por: Tao, Qiqing, et al.
Publicado: (2021)

Profiling of gene duplication patterns of sequenced teleost genomes: evidence for rapid lineage-specific genome expansion mediated by recent tandem duplications
por: Lu, Jianguo, et al.
Publicado: (2012)

MAGGIE: leveraging genetic variation to identify DNA sequence motifs mediating transcription factor binding and function
por: Shen, Zeyang, et al.
Publicado: (2020)

TinGa: fast and flexible trajectory inference with Growing Neural Gas
por: Todorov, Helena, et al.
Publicado: (2020)

Terminus enables the discovery of data-driven, robust transcript groups from RNA-seq data
por: Sarkar, Hirak, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_oa6ng30kkrmq1ppp4s0p1e4eu6