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Recent updates and developments to plant genome size databases
Two plant genome size databases have been recently updated and/or extended: the Plant DNA C-values database (http://data.kew.org/cvalues), and GSAD, the Genome Size in Asteraceae database (http://www.asteraceaegenomesize.com). While the first provides information on nuclear DNA contents across land...
Autores principales: | , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965065/ https://www.ncbi.nlm.nih.gov/pubmed/24288377 http://dx.doi.org/10.1093/nar/gkt1195 |
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author | Garcia, Sònia Leitch, Ilia J. Anadon-Rosell, Alba Canela, Miguel Á. Gálvez, Francisco Garnatje, Teresa Gras, Airy Hidalgo, Oriane Johnston, Emmeline Mas de Xaxars, Gemma Pellicer, Jaume Siljak-Yakovlev, Sonja Vallès, Joan Vitales, Daniel Bennett, Michael D. |
author_facet | Garcia, Sònia Leitch, Ilia J. Anadon-Rosell, Alba Canela, Miguel Á. Gálvez, Francisco Garnatje, Teresa Gras, Airy Hidalgo, Oriane Johnston, Emmeline Mas de Xaxars, Gemma Pellicer, Jaume Siljak-Yakovlev, Sonja Vallès, Joan Vitales, Daniel Bennett, Michael D. |
author_sort | Garcia, Sònia |
collection | PubMed |
description | Two plant genome size databases have been recently updated and/or extended: the Plant DNA C-values database (http://data.kew.org/cvalues), and GSAD, the Genome Size in Asteraceae database (http://www.asteraceaegenomesize.com). While the first provides information on nuclear DNA contents across land plants and some algal groups, the second is focused on one of the largest and most economically important angiosperm families, Asteraceae. Genome size data have numerous applications: they can be used in comparative studies on genome evolution, or as a tool to appraise the cost of whole-genome sequencing programs. The growing interest in genome size and increasing rate of data accumulation has necessitated the continued update of these databases. Currently, the Plant DNA C-values database (Release 6.0, Dec. 2012) contains data for 8510 species, while GSAD has 1219 species (Release 2.0, June 2013), representing increases of 17 and 51%, respectively, in the number of species with genome size data, compared with previous releases. Here we provide overviews of the most recent releases of each database, and outline new features of GSAD. The latter include (i) a tool to visually compare genome size data between species, (ii) the option to export data and (iii) a webpage containing information about flow cytometry protocols. |
format | Online Article Text |
id | pubmed-3965065 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-39650652014-03-25 Recent updates and developments to plant genome size databases Garcia, Sònia Leitch, Ilia J. Anadon-Rosell, Alba Canela, Miguel Á. Gálvez, Francisco Garnatje, Teresa Gras, Airy Hidalgo, Oriane Johnston, Emmeline Mas de Xaxars, Gemma Pellicer, Jaume Siljak-Yakovlev, Sonja Vallès, Joan Vitales, Daniel Bennett, Michael D. Nucleic Acids Res VII. Plant databases Two plant genome size databases have been recently updated and/or extended: the Plant DNA C-values database (http://data.kew.org/cvalues), and GSAD, the Genome Size in Asteraceae database (http://www.asteraceaegenomesize.com). While the first provides information on nuclear DNA contents across land plants and some algal groups, the second is focused on one of the largest and most economically important angiosperm families, Asteraceae. Genome size data have numerous applications: they can be used in comparative studies on genome evolution, or as a tool to appraise the cost of whole-genome sequencing programs. The growing interest in genome size and increasing rate of data accumulation has necessitated the continued update of these databases. Currently, the Plant DNA C-values database (Release 6.0, Dec. 2012) contains data for 8510 species, while GSAD has 1219 species (Release 2.0, June 2013), representing increases of 17 and 51%, respectively, in the number of species with genome size data, compared with previous releases. Here we provide overviews of the most recent releases of each database, and outline new features of GSAD. The latter include (i) a tool to visually compare genome size data between species, (ii) the option to export data and (iii) a webpage containing information about flow cytometry protocols. Oxford University Press 2014-01-01 2013-11-27 /pmc/articles/PMC3965065/ /pubmed/24288377 http://dx.doi.org/10.1093/nar/gkt1195 Text en © The Author(s) 2013. Published by Oxford University Press. http://creativecommons.org/licenses/by/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by/3.0/), which permits non-commercial reuse, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | VII. Plant databases Garcia, Sònia Leitch, Ilia J. Anadon-Rosell, Alba Canela, Miguel Á. Gálvez, Francisco Garnatje, Teresa Gras, Airy Hidalgo, Oriane Johnston, Emmeline Mas de Xaxars, Gemma Pellicer, Jaume Siljak-Yakovlev, Sonja Vallès, Joan Vitales, Daniel Bennett, Michael D. Recent updates and developments to plant genome size databases |
title | Recent updates and developments to plant genome size databases |
title_full | Recent updates and developments to plant genome size databases |
title_fullStr | Recent updates and developments to plant genome size databases |
title_full_unstemmed | Recent updates and developments to plant genome size databases |
title_short | Recent updates and developments to plant genome size databases |
title_sort | recent updates and developments to plant genome size databases |
topic | VII. Plant databases |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965065/ https://www.ncbi.nlm.nih.gov/pubmed/24288377 http://dx.doi.org/10.1093/nar/gkt1195 |
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